chr12 : 62,208,818 62,209,318
500 bp 67 TFs 0 linked genes
This 500 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:62,203,818 – 62,214,318
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
ATF6 1 dataset
Motif DE_60h DE_60h-ATF6_MA1466.2 13 bp overlap
Atoh1 1 dataset
Motif DE_60h DE_60h-Atoh1_MA1467.3 7 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 291 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 308 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 367 bp overlap
CTCF 2 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 313 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 262 bp overlap
Crx 2 datasets
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DMRT3 1 dataset
Motif DE_60h DE_60h-DMRT3_MA0610.2 7 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Dmbx1 1 dataset
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
ETV1 1 dataset
Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap
Erg 1 dataset
Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap
FOXA1 2 datasets
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 209 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 165 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 203 bp overlap
ChIP DE DE-FOXA2-1 500 bp overlap
ChIP DE DE-FOXA2-2 500 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 500 bp overlap
ChIP DE DE-GATA4-2 500 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 174 bp overlap
ChIP foregut GSE117136.GATA4.foregut 205 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 162 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 500 bp overlap
ChIP DE DE-GATA6-2 500 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 342 bp overlap
GSC 2 datasets
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Gfi1B 1 dataset
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
Hnf1A 1 dataset
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
Lef1 1 dataset
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MEF2D 1 dataset
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 207 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_60h DE_60h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
MXI1 1 dataset
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 454 bp overlap
MZF1 2 datasets
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
Msgn1 1 dataset
Motif DE_60h DE_60h-Msgn1_MA1524.3 10 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 497 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 470 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
NKX2-3 1 dataset
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 319 bp overlap
OTX1 2 datasets
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 3 datasets
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 331 bp overlap
PITX1 2 datasets
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
POU1F1 1 dataset
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
RHOXF1 2 datasets
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 370 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 488 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 293 bp overlap
TCF7 1 dataset
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 270 bp overlap
ZNF320 1 dataset
Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap
ZNF558 1 dataset
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap