chr12 : 51,386,423 51,386,739
316 bp 50 TFs 2 linked genes
This 316 bp open chromatin element is linked to GALNT6 and SLC4A8 and is bound by 50 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
GALNT6 4.6 kb Proximal Proximity
SLC4A8 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:51,381,423 – 51,391,739
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
AR 4 datasets
ChIP MCF-7 ERP001226.AR.MCF-7 136 bp overlap
ChIP breast_tumor_Male_20 GSE104399.AR.breast_tumor_Male_20 281 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 316 bp overlap
ChIP breast_tumor_Male_28 GSE104399.AR.breast_tumor_Male_28 255 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 316 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 316 bp overlap
BRD4 2 datasets
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 237 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 316 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 182 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 247 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 186 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 230 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 316 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 316 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 316 bp overlap
EP300 3 datasets
ChIP Ishikawa ENCFF364ZWT 316 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 259 bp overlap
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 316 bp overlap
EPAS1 1 dataset
ChIP PC-3_hypoxia GSE106305.EPAS1.PC-3_hypoxia 231 bp overlap
ESR1 43 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 235 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 316 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 146 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 223 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 152 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 316 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 254 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 127 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 316 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 226 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 291 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 316 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 288 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 313 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 316 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 299 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 227 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 244 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 120 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 136 bp overlap
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 285 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 276 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 154 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 133 bp overlap
ChIP MCF-7_TAMR GSE86538.ESR1.MCF-7_TAMR 236 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 316 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 186 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 191 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 181 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 204 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 151 bp overlap
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 219 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 188 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 208 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 315 bp overlap
ChIP breast_tumor_Male_20 GSE104399.ESR1.breast_tumor_Male_20 298 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 316 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 241 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_1 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_1 199 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 253 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_6 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_6 313 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 316 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 195 bp overlap
FOS 2 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 316 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 213 bp overlap
FOXA1 24 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 316 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 316 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 316 bp overlap
ChIP Ishikawa ENCSR000BKW.FOXA1.Ishikawa 154 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 295 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 228 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 205 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 273 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 316 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 281 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 316 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 316 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 316 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 257 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 189 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 236 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 282 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 229 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 316 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 316 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 316 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 264 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 198 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 302 bp overlap
FOXA2 6 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 316 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 316 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 316 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 316 bp overlap
ChIP DE DE-FOXA2-1 316 bp overlap
ChIP DE DE-FOXA2-2 316 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 316 bp overlap
ChIP DE DE-GATA4-2 316 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 226 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 316 bp overlap
ChIP DE DE-GATA6-2 316 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 145 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 202 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 316 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 316 bp overlap
JUN 2 datasets
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 316 bp overlap
ChIP MCF-7_TamR_BD610326 GSE128445.JUN.MCF-7_TamR_BD610326 316 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 316 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 138 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 316 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 316 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 279 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 281 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 316 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 316 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 275 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 137 bp overlap
PGR 3 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 316 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 316 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 172 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 110 bp overlap
ChIP stomach ENCFF820WZN 147 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE68976.RUNX1.Jurkat 166 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 227 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 215 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 174 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 316 bp overlap
SMAD3 4 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 278 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 316 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 316 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 316 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 226 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 186 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 303 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 290 bp overlap
SP7 1 dataset
ChIP HEK293 ENCFF733RBE 100 bp overlap
STAT3 1 dataset
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 312 bp overlap
SUZ12 1 dataset
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 225 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 305 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 302 bp overlap
ChIP RPMI8402 GSE39179.TCF12.RPMI8402 171 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 156 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCFF772OTG 265 bp overlap
USF1 1 dataset
ChIP Ishikawa ENCFF728IEG 261 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 157 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 265 bp overlap
ChIP HEK293 ENCFF336CWQ 316 bp overlap