chr11 : 90,176,135 90,177,347
1,212 bp 46 TFs 0 linked genes
This 1.2 kb open chromatin element has no linked target genes and is bound by 46 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:90,171,135 – 90,182,347
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP GSE110655.AR.LNCaP 208 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 206 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 143 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 225 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 67 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 321 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 639 bp overlap
BRD4 1 dataset
ChIP K-562 GSE140325.BRD4.K-562 100 bp overlap
CTCF 1 dataset
ChIP GM23338 ENCFF832KWE 116 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 279 bp overlap
ERG 3 datasets
ChIP VCaP GSE49091.ERG.VCaP 171 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 116 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 94 bp overlap
FOS 2 datasets
ChIP endothelial cell of umbilical vein ENCFF415XBG 328 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 310 bp overlap
FOXA2 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 443 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 296 bp overlap
ChIP DE DE-FOXA2-1 222 bp overlap
ChIP DE DE-FOXA2-1 465 bp overlap
ChIP DE DE-FOXA2-2 346 bp overlap
ChIP DE DE-FOXA2-2 420 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 158 bp overlap
GATA1 1 dataset
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA2 5 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 189 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 163 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 137 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 264 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 574 bp overlap
GATA3 5 datasets
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 270 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 275 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 270 bp overlap
ChIP SK-N-SH ENCFF040SSB 327 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 187 bp overlap
GATA4 9 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 178 bp overlap
ChIP DE DE-GATA4-1 204 bp overlap
ChIP DE DE-GATA4-1 569 bp overlap
ChIP DE DE-GATA4-2 379 bp overlap
ChIP DE DE-GATA4-2 630 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 451 bp overlap
ChIP foregut GSE117136.GATA4.foregut 360 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 295 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 202 bp overlap
ChIP DE DE-GATA6-1 541 bp overlap
ChIP DE DE-GATA6-2 1212 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 305 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 612 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 328 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 728 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 468 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 797 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 373 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 781 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 368 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 659 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 299 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 563 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 341 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 162 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 648 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 240 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 397 bp overlap
ISL1 4 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 322 bp overlap
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 492 bp overlap
ChIP SK-N-SH ENCFF285GEQ 198 bp overlap
ChIP SK-N-SH ENCFF285GEQ 485 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 424 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 524 bp overlap
MYCN 1 dataset
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 105 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 243 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 157 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 363 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 144 bp overlap
Prdm5 1 dataset
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 274 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 210 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 188 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 324 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 479 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 747 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 338 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 287 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 286 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 334 bp overlap
SMAD3 3 datasets
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 180 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 312 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 214 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 598 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 158 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 233 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 338 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 219 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 149 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 149 bp overlap
VDR 1 dataset
ChIP LS180 GSE31939.VDR.LS180 232 bp overlap
ZIM3 1 dataset
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
mix-a 1 dataset
Motif DE_60h DE_60h-mix-a_MA0621.2 7 bp overlap