chr11 : 88,016,959 – 88,017,210
251 bp 65 TFs 0 linked genes
This 251 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:88,011,959 – 88,022,210
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-C4-2B_R1881_SHCTR GSE61268.AR.LNCaP-C4-2B_R1881_SHCTR 96 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BRD4 1 dataset
ChIP VCaP GSE148358.BRD4.VCaP 181 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 53 bp overlap
CTCF 50 datasets
ChIP B cell ENCFF500PZO 169 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 55 bp overlap
ChIP C4-2B ENCFF821XVN 119 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 102 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 187 bp overlap
ChIP Caco-2 ENCFF753NZV 70 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 102 bp overlap
ChIP GM23338 ENCFF832KWE 134 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 114 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 251 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 111 bp overlap
ChIP NPC GSE115407.CTCF.NPC 242 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 53 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 81 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 116 bp overlap
ChIP Panc1 ENCFF056JQX 165 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 52 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 50 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 81 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 165 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 110 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 168 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 66 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 120 bp overlap
ChIP ascending aorta ENCFF451CCT 51 bp overlap
ChIP chondrocyte ENCFF134ORZ 113 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 87 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 106 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 121 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 135 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF476NBQ 52 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF483ZLP 93 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF784LWO 75 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812JWS 60 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF841TWE 96 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 91 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 211 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 104 bp overlap
ChIP heart right ventricle ENCFF767XJQ 67 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 98 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 129 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 59 bp overlap
ChIP neuron GSE115407.CTCF.neuron 214 bp overlap
ChIP pancreas ENCFF315CUI 83 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 199 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 54 bp overlap
ChIP right atrium auricular region ENCFF696NTN 112 bp overlap
ChIP spleen ENCFF065CBS 110 bp overlap
ChIP spleen ENCFF121QGK 88 bp overlap
ChIP thoracic aorta ENCFF166PKA 81 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 79 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 207 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 118 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 197 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 51 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 251 bp overlap
GATA2 1 dataset
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 251 bp overlap
ChIP DE DE-GATA4-2 251 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 251 bp overlap
ChIP DE DE-GATA6-2 251 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 251 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 251 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 251 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 251 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 251 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 251 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 251 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXB9 1 dataset
Motif DE_12h DE_12h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap
HOXC11 1 dataset
Motif DE_12h DE_12h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap
HOXC13 1 dataset
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
HOXC9 1 dataset
Motif DE_12h DE_12h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
HOXD12 1 dataset
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hoxa11 1 dataset
Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 251 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 251 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 251 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MAF 1 dataset
ChIP lymphocyte_Th17_IL10+_Day5 GSE101389.MAF.lymphocyte_Th17_IL10+_Day5 59 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 251 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 116 bp overlap
Nr2e3 2 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
RAD21 8 datasets
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 194 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 165 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 90 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 251 bp overlap
ChIP MDM GSE103477.RAD21.MDM 54 bp overlap
ChIP MDM_-dNS1 GSE103477.RAD21.MDM_-dNS1 80 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 154 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 145 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 251 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 251 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 251 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 251 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 251 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 251 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 251 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 251 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 251 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 202 bp overlap
SMC1A 1 dataset
ChIP HCT-116 GSE112000.SMC1A.HCT-116 92 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 63 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 120 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 74 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 74 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 191 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TCF7L2 1 dataset
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 166 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCFF919OMX 60 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZNF784 1 dataset
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
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