chr11 : 43,268,899 – 43,269,095
196 bp 40 TFs 1 linked gene
This 196 bp open chromatin element is linked to HNRNPKP3 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HNRNPKP3 330 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:43,263,899 – 43,274,095
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 196 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 130 bp overlap
CTCF 91 datasets
ChIP 22Rv1 ENCFF466OXN 196 bp overlap
ChIP 22Rv1 ENCFF466OXN 196 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 196 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 196 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 138 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 196 bp overlap
ChIP BE2C ENCFF757SRF 196 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 162 bp overlap
ChIP C4-2B ENCFF821XVN 196 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 157 bp overlap
ChIP D721Med ENCFF513FYD 143 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 62 bp overlap
ChIP GM23338 ENCFF531QOI 196 bp overlap
ChIP GM23338 ENCFF772DML 185 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 136 bp overlap
ChIP H1 ENCFF764RHO 196 bp overlap
ChIP H9 ENCFF152GTF 196 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 153 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 142 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 186 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 196 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 151 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 152 bp overlap
ChIP HEK293 ENCFF498RMM 196 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 102 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 163 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 163 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 165 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 196 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 196 bp overlap
ChIP HeLa-S3 ENCFF565UFR 158 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 162 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 184 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 196 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 176 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 136 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 101 bp overlap
ChIP HepG2 ENCFF127KUP 196 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 119 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 196 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 83 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 196 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 196 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 130 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 196 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 196 bp overlap
ChIP MCF-7 ENCFF198DQX 196 bp overlap
ChIP MCF-7 ENCFF494VXA 196 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 179 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 182 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 196 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 196 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 196 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 173 bp overlap
ChIP PC-3 ENCFF487TUI 196 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 196 bp overlap
ChIP Panc1 ENCFF056JQX 196 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 146 bp overlap
ChIP SK-N-SH ENCFF731NJX 196 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 144 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 166 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 126 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 196 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 196 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 196 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 172 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 105 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 127 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 172 bp overlap
ChIP brain ENCFF067KUH 196 bp overlap
ChIP brain ENCFF163BBN 196 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 164 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 117 bp overlap
ChIP endodermal cell ENCFF471YCZ 188 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 193 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 147 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 196 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 152 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 155 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 196 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 196 bp overlap
ChIP islet ERP004003.CTCF.islet 150 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 145 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 164 bp overlap
ChIP neural progenitor cell ENCFF420RBO 196 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 196 bp overlap
ChIP neuroblastoma GSE115862.CTCF.neuroblastoma 196 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 148 bp overlap
GATA2 1 dataset
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 172 bp overlap
GATA4 1 dataset
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 196 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 185 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 184 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 65 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr1h3::Rxra 1 dataset
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
PKNOX2 1 dataset
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Pparg::Rxra 1 dataset
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 196 bp overlap
ChIP H1 ENCFF967OJF 196 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 82 bp overlap
RARA::RXRA 1 dataset
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
SMC3 3 datasets
ChIP GP5D GSE51234.SMC3.GP5D 148 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 117 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 154 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 162 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 162 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TGIF1 1 dataset
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
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