chr9 : 104,498,568 104,499,420
852 bp 40 TFs 0 linked genes
This 852 bp open chromatin element has no linked target genes and is bound by 40 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:104,493,568 – 104,504,420
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_DHT GSE83860.AR.LNCaP_DHT 207 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 309 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 248 bp overlap
EOMES 2 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 395 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 469 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 370 bp overlap
FOXA2 8 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 559 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 297 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 221 bp overlap
ChIP DE DE-FOXA2-1 666 bp overlap
ChIP DE DE-FOXA2-2 423 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 199 bp overlap
ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 218 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 339 bp overlap
GATA3 2 datasets
ChIP A1A3_Brg1KD_Dex GSE112491.GATA3.A1A3_Brg1KD_Dex 258 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 263 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 664 bp overlap
ChIP DE DE-GATA4-2 577 bp overlap
ChIP foregut GSE117136.GATA4.foregut 367 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 531 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 852 bp overlap
GATA6 13 datasets
ChIP AGS GSE51705.GATA6.AGS 154 bp overlap
ChIP DE DE-GATA6-1 677 bp overlap
ChIP DE DE-GATA6-2 598 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 265 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 419 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 413 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 535 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 398 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 175 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 715 bp overlap
ChIP foregut GSE117136.GATA6.foregut 286 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 643 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 848 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 293 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 365 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 339 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 267 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 506 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 422 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 476 bp overlap
RAD21 1 dataset
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 107 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 396 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 423 bp overlap
SOX2 1 dataset
ChIP HCC95 GSE137459.SOX2.HCC95 232 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
TBR1 1 dataset
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 3 datasets
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCFF951HUW 485 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 493 bp overlap
TBX3 1 dataset
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
THRB 1 dataset
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
TP63 1 dataset
ChIP BxPC-3 GSE115461.TP63.BxPC-3 325 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF75A 1 dataset
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap