chr9 : 100,671,665 100,672,131
466 bp 41 TFs 0 linked genes
This 466 bp open chromatin element has no linked target genes and is bound by 41 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:100,666,665 – 100,677,131
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE43720.AR.LNCaP 136 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 432 bp overlap
BRD4 1 dataset
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 198 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 220 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 164 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 189 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 330 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 323 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 431 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 406 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 291 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 323 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 243 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 446 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 466 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 466 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 280 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 393 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 265 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 170 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 453 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 73 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 466 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 287 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 375 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 230 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 466 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 254 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 466 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 310 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 276 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 308 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 327 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 323 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 342 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap