chr1 : 179,796,576 – 179,797,279
703 bp 42 TFs 0 linked genes
This 703 bp open chromatin element has no linked target genes and is bound by 42 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:179,791,576 – 179,802,279
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
BRD2 1 dataset
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 287 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 341 bp overlap
CTCF 93 datasets
ChIP 22Rv1 ENCFF466OXN 482 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 404 bp overlap
ChIP 81-3 ERP002246.CTCF.81-3 104 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 217 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 147 bp overlap
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 138 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 254 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 204 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 149 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 176 bp overlap
ChIP GM23338 ENCFF531QOI 390 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 433 bp overlap
ChIP H54 ENCFF255TVO 225 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 186 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 220 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 204 bp overlap
ChIP HEK293 ENCFF821TIC 352 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 122 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 199 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 168 bp overlap
ChIP HeLa-S3 ENCFF626XQK 251 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 228 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 102 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 215 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 171 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 196 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 167 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 174 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 122 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 106 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 100 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 101 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 109 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 105 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 127 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 400 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 104 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 290 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF111MGE 245 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 212 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 182 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 135 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 217 bp overlap
ChIP Loucy ENCFF359TVQ 229 bp overlap
ChIP Loucy ENCFF359TVQ 179 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 331 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 313 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 195 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 171 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 148 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 265 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 251 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 108 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 197 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 147 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 153 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 115 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 229 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 444 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 255 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 279 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 226 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 239 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 108 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 96 bp overlap
ChIP TALL-1_Pat1 GSE130140.CTCF.TALL-1_Pat1 151 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 160 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 209 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 168 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 342 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 232 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 479 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 135 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 242 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 362 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 151 bp overlap
ChIP islet ERP004003.CTCF.islet 289 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 164 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 143 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 107 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 372 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 213 bp overlap
CTCFL 1 dataset
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 206 bp overlap
ChIP BLaER1 ENCFF335XTP 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 358 bp overlap
ESR1 2 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 154 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 183 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 415 bp overlap
ChIP DE DE-GATA4-2 517 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 377 bp overlap
ChIP DE DE-GATA6-2 481 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 316 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 365 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 570 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 430 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 585 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 619 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 681 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 199 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 295 bp overlap
GLIS2 1 dataset
Motif DE_36h DE_36h-GLIS2_MA0736.1 14 bp overlap
GLIS3 2 datasets
Motif DE_36h DE_36h-GLIS3_MA0737.1 14 bp overlap
ChIP H9_plus GSE109562.GLIS3.H9_plus 444 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 365 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 533 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 326 bp overlap
KDM3A 1 dataset
ChIP 22Rv1_shKDM3A GSE109748.KDM3A.22Rv1_shKDM3A 247 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 207 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 147 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 118 bp overlap
OGG1 1 dataset
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 117 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 206 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 282 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 291 bp overlap
RAD21 25 datasets
ChIP GM12878 ENCFF101UQZ 191 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 141 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 265 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 245 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 185 bp overlap
ChIP HCT116 ENCFF568PEO 311 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 144 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 160 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 262 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 113 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 126 bp overlap
ChIP K562 ENCFF634XYR 361 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 281 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 186 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 174 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 148 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 138 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 141 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 215 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 246 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 118 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 703 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 489 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 609 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 299 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 407 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 405 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 486 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 474 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 550 bp overlap
STAG1 4 datasets
ChIP HeLa GSE126990.STAG1.HeLa 300 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 300 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 173 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 158 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 263 bp overlap
TAL1 1 dataset
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 172 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 197 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 174 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 120 bp overlap
ZIC1 1 dataset
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 136 bp overlap
ZIC4 1 dataset
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF276 1 dataset
ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 181 bp overlap
ZNF436 1 dataset
ChIP HEK293 GSE76494.ZNF436.HEK293 85 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 191 bp overlap
ZNF654 1 dataset
ChIP HEK293 ENCSR504VDV.ZNF654.HEK293 197 bp overlap
ZNF768 1 dataset
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
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