chr9 : 42,323,285 – 42,323,738

453 bp 55 TFs 0 linked genes

This 453 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

55 transcription factors

ATF4 1 dataset

Motif DE_24h DE_24h-ATF4_MA0833.3 10 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 322 bp overlap

CREB1 3 datasets

Motif DE_24h DE_24h-CREB1_MA0018.5 8 bp overlap

ChIP GM23338 ENCFF432ZEW 305 bp overlap

ChIP H1 ENCFF955PMP 321 bp overlap

EBF1 1 dataset

Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ERF::FOXO1 1 dataset

Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap

ERF::NHLH1 1 dataset

Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap

ERG 1 dataset

ChIP SKNO-1 GSE23730.ERG.SKNO-1 203 bp overlap

ESR2 1 dataset

Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap

ETV1 2 datasets

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap

ETV5::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

Ebf4 1 dataset

Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

FLI1 2 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 176 bp overlap

ChIP SKNO-1 GSE23730.FLI1.SKNO-1 261 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 321 bp overlap

ChIP DE DE-FOXA2-2 370 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-2 313 bp overlap

GATA6 4 datasets

ChIP DE DE-GATA6-2 266 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 280 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 311 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 279 bp overlap

HDAC2 1 dataset

ChIP H1 ENCFF939VKA 207 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

IKZF2 3 datasets

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 2 datasets

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

JUN 7 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 326 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 440 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 441 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 433 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 355 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 403 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 289 bp overlap

MEIS1 4 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap

Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap

Motif DE_24h DE_24h-MEIS1_MA1639.2 9 bp overlap

MEIS2 2 datasets

Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap

Motif DE_24h DE_24h-MEIS2_MA0774.1 8 bp overlap

NANOG 2 datasets

ChIP H1 ENCFF747ZPQ 221 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 159 bp overlap

NCOR1 1 dataset

ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap

ONECUT2 1 dataset

Motif DE_12h DE_12h-ONECUT2_MA0756.3 8 bp overlap

PAX3 2 datasets

Motif DE_12h DE_12h-PAX3_MA1546.2 14 bp overlap

Motif DE_24h DE_24h-PAX3_MA1546.2 14 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 297 bp overlap

POU5F1 1 dataset

Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap

RARA 1 dataset

Motif DE_24h DE_24h-RARA_MA0729.1 18 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 295 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 326 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 351 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 146 bp overlap

SMARCA4 1 dataset

ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap

SREBF1 1 dataset

Motif DE_24h DE_24h-SREBF1_MA0595.1 10 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 186 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 189 bp overlap

TCF12 1 dataset

ChIP H1 ENCFF203EBH 233 bp overlap

TFAP4::ETV1 1 dataset

Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap

THAP1 1 dataset

Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap

YY1 1 dataset

ChIP H1 ENCFF524BTL 267 bp overlap

ZBTB26 1 dataset

Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap

ZFP14 1 dataset

Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap

ZIC2 1 dataset

ChIP HEK293 ENCFF033NQQ 323 bp overlap

ZNF175 1 dataset

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF423 1 dataset

ChIP WTC11 ENCFF574PBR 208 bp overlap

ZNF549 1 dataset

Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap