chr8 : 54,464,390 – 54,464,924
534 bp 38 TFs 2 linked genes
This 534 bp open chromatin element is linked to ENSG00000274310 and SOX17 and is bound by 38 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000274310 2.3 kb Proximal Proximity
SOX17 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:54,459,390 – 54,469,924
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 383 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 214 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 534 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 534 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 240 bp overlap
CBFA2T3 1 dataset
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 285 bp overlap
CBX8 4 datasets
ChIP H1 ENCFF095JHA 355 bp overlap
ChIP H1 ENCFF095JHA 534 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 317 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 87 bp overlap
CEBPA 1 dataset
ChIP U-937 ERP008568.CEBPA.U-937 85 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 431 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 178 bp overlap
EZH2 26 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 489 bp overlap
ChIP A673 ENCFF955JRZ 534 bp overlap
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 249 bp overlap
ChIP GM23248 ENCFF404ZHM 183 bp overlap
ChIP GM23338 ENCFF613YON 534 bp overlap
ChIP H1 ENCFF232NZA 534 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 534 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 323 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 90 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 244 bp overlap
ChIP astrocyte ENCFF365JTP 534 bp overlap
ChIP astrocyte ENCFF365JTP 339 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 534 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 54 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 344 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 137 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 279 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 428 bp overlap
ChIP fibroblast of lung ENCFF479BAW 494 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 51 bp overlap
ChIP keratinocyte ENCFF070STK 469 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 480 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 513 bp overlap
ChIP neural progenitor cell ENCFF018MKA 534 bp overlap
ChIP neural progenitor cell ENCFF472NFV 534 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 388 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 269 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA4 5 datasets
ChIP A-549 GSE85002.GATA4.A-549 192 bp overlap
ChIP DE DE-GATA4-1 243 bp overlap
ChIP DE DE-GATA4-2 499 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 494 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 342 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 464 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 532 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 534 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 196 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 534 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 321 bp overlap
JARID2 8 datasets
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 484 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 369 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 534 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 434 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 245 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 331 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 77 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 534 bp overlap
MYC 1 dataset
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 534 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 475 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 296 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 275 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 534 bp overlap
PCGF2 2 datasets
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 488 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 202 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 534 bp overlap
RING1 1 dataset
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 278 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 58 bp overlap
ChIP H1 ENCFF239FFS 396 bp overlap
ChIP H1 ENCFF239FFS 449 bp overlap
ChIP HMELBRAF_OVER GSE51929.RNF2.HMELBRAF_OVER 174 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 199 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 302 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 117 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 188 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 311 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 153 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 93 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 266 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 292 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 264 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 258 bp overlap
SUZ12 5 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 315 bp overlap
ChIP H1 ENCFF881NFR 534 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 230 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 394 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 277 bp overlap
TAL1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 194 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 258 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 368 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 369 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 212 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 55 bp overlap
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