chr1 : 161,037,710 – 161,037,969

259 bp 44 TFs 4 linked genes

This 259 bp open chromatin element is linked to 4 target genes and is bound by 44 transcription factors.

Linked Genes

4 genes

Gene	Dist. to TSS	Distance	Link type
ENSG00000270149	992 bp	At TSS	Proximity
TSTD1	1.0 kb	Proximal	Proximity
USF1	8.0 kb	Proximal	Proximity
ENSG00000289121	8.1 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

44 transcription factors

AGO1 2 datasets

ChIP K-562 GSE120104.AGO1.K-562 142 bp overlap

ChIP K-562 ENCSR641BSL.AGO1.K-562 137 bp overlap

AR 1 dataset

ChIP LNCaP_Veh GSE125245.AR.LNCaP_Veh 57 bp overlap

ARID1A 1 dataset

ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 89 bp overlap

BCL6 1 dataset

ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 99 bp overlap

BRD1 1 dataset

ChIP HUES-64 GSE104059.BRD1.HUES-64 259 bp overlap

BRD4 5 datasets

ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 227 bp overlap

ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 180 bp overlap

ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 134 bp overlap

ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 163 bp overlap

ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 259 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 135 bp overlap

CBX4 1 dataset

ChIP hMSC GSE117084.CBX4.hMSC 51 bp overlap

CDKN1B 1 dataset

ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 167 bp overlap

CTBP1 1 dataset

ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 134 bp overlap

CTCF 1 dataset

ChIP keratinocyte GSE154221.CTCF.keratinocyte 73 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF031ISE 219 bp overlap

ChIP BLaER1 ENCFF274GAT 259 bp overlap

ESR1 2 datasets

ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 140 bp overlap

ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 195 bp overlap

ESR1_pS118 1 dataset

ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 248 bp overlap

EZH2 1 dataset

ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 172 bp overlap

FOS 1 dataset

ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 259 bp overlap

GRHL2 1 dataset

ChIP MCF-7 GSE109820.GRHL2.MCF-7 108 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 116 bp overlap

HDAC1 2 datasets

ChIP MCF-7_ARID1A-KO GSE123284.HDAC1.MCF-7_ARID1A-KO 214 bp overlap

ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 78 bp overlap

IRF4 1 dataset

ChIP U266 GSE142493.IRF4.U266 184 bp overlap

KDM5B 1 dataset

ChIP T-47D GSE46055.KDM5B.T-47D 95 bp overlap

KLF9 2 datasets

ChIP MCF-7 ENCFF618FCM 259 bp overlap

ChIP MCF-7 ENCSR125ZYC.KLF9.MCF-7 199 bp overlap

MNT 1 dataset

ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 183 bp overlap

NEUROG2 1 dataset

ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 68 bp overlap

NFKB1 1 dataset

ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 224 bp overlap

PAF1 1 dataset

ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 235 bp overlap

PHIP 1 dataset

ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 151 bp overlap

PKNOX1 2 datasets

ChIP MCF-7 ENCFF116OCS 259 bp overlap

ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 244 bp overlap

PLAG1 1 dataset

ChIP K-562 GSE111469.PLAG1.K-562 58 bp overlap

POLR2G 1 dataset

ChIP HepG2 ENCFF508UTS 259 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 163 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 97 bp overlap

RAD21 1 dataset

ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 215 bp overlap

SAP30 1 dataset

ChIP WA01 ENCSR000ATR.SAP30.WA01 227 bp overlap

SFPQ 1 dataset

ChIP LTAD_EtOH GSE94577.SFPQ.LTAD_EtOH 220 bp overlap

SIN3A 4 datasets

ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 254 bp overlap

ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 63 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 222 bp overlap

ChIP WA01 ENCSR000BIS.SIN3A.WA01 107 bp overlap

SMARCA4 2 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 115 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 259 bp overlap

SMARCB1 1 dataset

ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 122 bp overlap

SMC1 1 dataset

ChIP HCT-116 GSE131606.SMC1.HCT-116 238 bp overlap

STAT3 3 datasets

ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 82 bp overlap

ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 114 bp overlap

ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 95 bp overlap

SUPT5H 2 datasets

ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 66 bp overlap

ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 181 bp overlap

ZBTB6 1 dataset

ChIP HEK293 GSE76494.ZBTB6.HEK293 221 bp overlap

ZFX 1 dataset

ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 153 bp overlap

ZNF18 1 dataset

ChIP HEK293 GSE76494.ZNF18.HEK293 82 bp overlap