chr1 : 160,947,055 – 160,947,669
614 bp 35 TFs 14 linked genes
This 614 bp open chromatin element is linked to 14 target genes and is bound by 35 transcription factors.
Linked Genes
14 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ITLN2 7.1 kb Proximal Proximity
F11R 73.7 kb Distal Multiome
TSTD1 91.6 kb Distal Multiome
USF1 98.5 kb Distal Multiome
KLHDC9 151.0 kb Distal Multiome
PFDN2 170.6 kb Distal Multiome
NIT1 170.7 kb Distal Multiome
DEDD 185.2 kb Distal Multiome
UFC1 206.6 kb Distal Multiome
PPOX 219.0 kb Distal Multiome
B4GALT3 230.1 kb Distal Multiome
CD48 235.6 kb Distal Multiome
NDUFS2 255.0 kb Distal Multiome
ENSG00000228863 273.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:160,942,055 – 160,952,669
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
CTCF 3 datasets
ChIP Peyer's patch ENCFF746TCR 357 bp overlap
ChIP Peyer's patch ENCFF828IDE 341 bp overlap
ChIP endodermal cell ENCFF471YCZ 450 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 377 bp overlap
ERF::FOXI1 1 dataset
Motif DE_72h DE_72h-ERFFOXI1_MA1935.2 10 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_72h DE_72h-ETV2FOXI1_MA1942.2 11 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_72h DE_72h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 270 bp overlap
ChIP DE DE-FOXA2-2 549 bp overlap
GATA1 2 datasets
ChIP erythroblast ENCFF867JAR 576 bp overlap
ChIP erythroblast ENCFF867JAR 430 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 424 bp overlap
ChIP DE DE-GATA4-2 556 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 537 bp overlap
ChIP DE DE-GATA6-2 560 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 516 bp overlap
IKZF1 2 datasets
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Irf1 1 dataset
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
OSR1 1 dataset
Motif DE_72h DE_72h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap
PKNOX2 1 dataset
Motif DE_72h DE_72h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 150 bp overlap
PROX1 1 dataset
Motif DE_72h DE_72h-PROX1_MA0794.1 12 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 511 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 439 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 402 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 385 bp overlap
SPIC 2 datasets
Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap
Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap
Spi1 1 dataset
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 381 bp overlap
TGIF1 1 dataset
Motif DE_72h DE_72h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_72h DE_72h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_72h DE_72h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_72h DE_72h-TGIF2LY_MA1572.1 12 bp overlap
ZNF184 1 dataset
Motif DE_72h DE_72h-ZNF184_MA2120.1 13 bp overlap
ZNF257 1 dataset
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 104 bp overlap
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