chr7 : 139,838,738 139,839,616
878 bp 42 TFs 2 linked genes
This 878 bp open chromatin element is linked to TBXAS1 and HIPK2 and is bound by 42 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TBXAS1 60.9 kb Distal Multiome
HIPK2 61.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:139,833,738 – 139,844,616
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ARID4B 2 datasets
ChIP K562 ENCFF791HBV 349 bp overlap
ChIP K562 ENCFF791HBV 566 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 123 bp overlap
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 159 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 367 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 146 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 573 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 464 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 389 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 582 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 446 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 342 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 641 bp overlap
ChIP DE DE-FOXA2-2 627 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 822 bp overlap
ChIP DE DE-GATA4-2 854 bp overlap
ChIP foregut GSE117136.GATA4.foregut 436 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 821 bp overlap
ChIP DE DE-GATA6-2 878 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 587 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 546 bp overlap
ChIP foregut GSE117136.GATA6.foregut 412 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 191 bp overlap
IKZF1 1 dataset
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
Lhx3 1 dataset
Motif DE_72h DE_72h-Lhx3_MA0135.2 12 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 473 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 492 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 380 bp overlap
MNT 1 dataset
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 208 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 157 bp overlap
MYOG 1 dataset
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 237 bp overlap
NHLH1 1 dataset
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 264 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 371 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 243 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 489 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 849 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 554 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 325 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 174 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 183 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 406 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 427 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
STAT3 1 dataset
Motif DE_72h DE_72h-STAT3_MA0144.3 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 224 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 154 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP K562 ENCFF202SFC 177 bp overlap
ZNF263 1 dataset
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF85 1 dataset
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap