chr7 : 89,825,865 – 89,827,061
1,196 bp 60 TFs 0 linked genes
This 1.2 kb open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:89,820,865 – 89,832,061
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
CEBPA 2 datasets
Motif DE_48h DE_48h-CEBPA_MA0102.5 10 bp overlap
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
CEBPD 2 datasets
Motif DE_48h DE_48h-CEBPD_MA0836.3 8 bp overlap
Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap
CTCF 58 datasets
ChIP C4-2B ENCFF821XVN 751 bp overlap
ChIP GM23338 ENCFF832KWE 479 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 264 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 234 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 432 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 242 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 173 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 288 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 333 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 277 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 299 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 287 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 320 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 86 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 72 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 92 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 379 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 134 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 118 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 151 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 543 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 241 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 447 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 166 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 148 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 92 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 149 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 252 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 208 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 112 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 200 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 161 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 246 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 473 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 310 bp overlap
ChIP VCaP ENCFF858YQT 407 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 505 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 191 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 196 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 165 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 194 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 173 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 203 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF038KTR 345 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 491 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 458 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF483ZLP 501 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF483ZLP 312 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 481 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 477 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF756TDJ 457 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 151 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 562 bp overlap
ChIP neural cell ENCFF335ADI 310 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 149 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 273 bp overlap
Dux 1 dataset
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
EOMES 2 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 314 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 191 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 188 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 238 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 248 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 231 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 226 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 231 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 206 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 229 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 221 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 232 bp overlap
FOXA1 4 datasets
ChIP MCF-7 GSE80808.FOXA1.MCF-7 159 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 141 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 222 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 236 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 885 bp overlap
ChIP DE DE-FOXA2-2 909 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 520 bp overlap
ChIP DE DE-GATA4-2 701 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 427 bp overlap
ChIP DE DE-GATA6-2 726 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 506 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 280 bp overlap
HIF1A 1 dataset
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.HIF1A.LNCaP_androgen-N_hypoxia-N 135 bp overlap
HMBOX1 1 dataset
Motif DE_60h DE_60h-HMBOX1_MA0895.2 7 bp overlap
Hand1 5 datasets
Motif DE_36h DE_36h-Hand1_MA2123.1 9 bp overlap
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
Motif DE_60h DE_60h-Hand1_MA2123.1 9 bp overlap
Motif DE_60h DE_60h-Hand1_MA2123.1 9 bp overlap
IKZF1 1 dataset
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
MEF2C 2 datasets
Motif DE_48h DE_48h-MEF2C_MA0497.2 11 bp overlap
Motif DE_60h DE_60h-MEF2C_MA0497.2 11 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 213 bp overlap
MGA 1 dataset
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 360 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 209 bp overlap
POU2F1 2 datasets
Motif DE_48h DE_48h-POU2F1_MA0785.2 9 bp overlap
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU2F3 2 datasets
Motif DE_48h DE_48h-POU2F3_MA0627.3 9 bp overlap
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
POU3F4 2 datasets
Motif DE_48h DE_48h-POU3F4_MA0789.1 9 bp overlap
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
POU5F1 2 datasets
Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
POU5F1B 2 datasets
Motif DE_48h DE_48h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_60h DE_60h-POU5F1B_MA0792.1 9 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 11 datasets
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 143 bp overlap
ChIP HCT116 ENCFF568PEO 311 bp overlap
ChIP HEC-1-B GSE139679.RAD21.HEC-1-B 211 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 119 bp overlap
ChIP MCF-7 ENCFF694KOM 87 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 381 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 261 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 258 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 536 bp overlap
ChIP neural cell ENCFF564MOT 312 bp overlap
REST 1 dataset
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 205 bp overlap
SIX2 1 dataset
Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap
SMAD2 3 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 184 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 445 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 305 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 216 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 201 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE76893.SMC1A.MCF-7 151 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 461 bp overlap
ChIP neural cell ENCFF795YGY 213 bp overlap
SPI1 5 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 227 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 196 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 173 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 116 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 173 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 166 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 164 bp overlap
Six3 3 datasets
Motif DE_36h DE_36h-Six3_MA0631.2 11 bp overlap
Motif DE_48h DE_48h-Six3_MA0631.2 11 bp overlap
Motif DE_60h DE_60h-Six3_MA0631.2 11 bp overlap
Spi1 1 dataset
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 228 bp overlap
TBR1 1 dataset
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Tbx6 1 dataset
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
ZBTB26 2 datasets
Motif DE_48h DE_48h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZNF184 1 dataset
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
ZNF384 2 datasets
Motif DE_48h DE_48h-ZNF384_MA1125.2 8 bp overlap
Motif DE_60h DE_60h-ZNF384_MA1125.2 8 bp overlap
ZNF75D 1 dataset
Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap
ZSCAN21 2 datasets
Motif DE_48h DE_48h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_60h DE_60h-ZSCAN21_MA2336.1 7 bp overlap
Zic1::Zic2 2 datasets
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
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