chr6 : 116,528,894 – 116,529,270
376 bp 40 TFs 1 linked gene
This 376 bp open chromatin element is linked to CALHM4 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CALHM4 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:116,523,894 – 116,534,270
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
ARID1A 4 datasets
ChIP 12Z GSE129781.ARID1A.12Z 245 bp overlap
ChIP HAP1 GSE108387.ARID1A.HAP1 72 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 259 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 216 bp overlap
BRD4 11 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 192 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 175 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 243 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 243 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 219 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 334 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 184 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 241 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 113 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 182 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 131 bp overlap
ERG 6 datasets
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 69 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 80 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 129 bp overlap
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 51 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 104 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 71 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 95 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 133 bp overlap
FOSL1 2 datasets
ChIP HepG2 ENCFF095FBN 276 bp overlap
ChIP HepG2 ENCFF095FBN 227 bp overlap
FOSL2 2 datasets
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 121 bp overlap
ChIP SK-N-SH ENCFF127ZDW 198 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 205 bp overlap
ChIP DE DE-FOXA2-2 246 bp overlap
FOXL2 5 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 122 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 180 bp overlap
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 122 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 124 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 196 bp overlap
GATA2 6 datasets
ChIP ESF GSE108408.GATA2.ESF 195 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 141 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 230 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 214 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 188 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 164 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 170 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 147 bp overlap
ChIP DE DE-GATA4-1 253 bp overlap
ChIP DE DE-GATA4-2 337 bp overlap
ChIP foregut GSE117136.GATA4.foregut 169 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 240 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 211 bp overlap
ChIP DE DE-GATA6-2 263 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 198 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 182 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 355 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 256 bp overlap
ChIP foregut GSE117136.GATA6.foregut 179 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 145 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 261 bp overlap
JUN 12 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 254 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 341 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 376 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 297 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 201 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 178 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 172 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 180 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 210 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 298 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 201 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 191 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 143 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 172 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 189 bp overlap
NANOG 1 dataset
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 150 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 139 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 209 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 236 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 204 bp overlap
RELA 30 datasets
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 242 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 184 bp overlap
ChIP HAEC GSE89970.RELA.HAEC 127 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 263 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 152 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 131 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 201 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 126 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 162 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 197 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 183 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 178 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 200 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 105 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 112 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 133 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 118 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 126 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 176 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 163 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 143 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 282 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 195 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 154 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 141 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 193 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 179 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 198 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 307 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 175 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 166 bp overlap
ChIP G-401_Dox GSE71504.SMARCA4.G-401_Dox 109 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 290 bp overlap
SMARCC1 2 datasets
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 83 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 159 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 275 bp overlap
SMC3 1 dataset
ChIP HeLa_ESCO2-deltaPBMA_ESCO1_siRNA GSE105004.SMC3.HeLa_ESCO2-deltaPBMA_ESCO1_siRNA 193 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 250 bp overlap
SOX4 1 dataset
ChIP MDA-MB-231_TGFb GSE104760.SOX4.MDA-MB-231_TGFb 96 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 325 bp overlap
TEAD1 4 datasets
ChIP CCLP1 GSE62272.TEAD1.CCLP1 169 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 118 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 255 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 134 bp overlap
TEAD4 1 dataset
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 173 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 69 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 270 bp overlap
ZNF341 1 dataset
ChIP HEK293 ENCFF944VMC 261 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 259 bp overlap
ZNF449 2 datasets
ChIP HEK293 ENCFF764ZIC 150 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 188 bp overlap
Huangfu Lab · Publications · Resources · Contact