chr1 : 115,632,646 – 115,633,035
389 bp 51 TFs 1 linked gene
This 389 bp open chromatin element is linked to VANGL1 and is bound by 51 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VANGL1 9.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:115,627,646 – 115,638,035
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 212 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 181 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 389 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 182 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 163 bp overlap
DMRTC2 1 dataset
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 294 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 219 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 200 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 358 bp overlap
ChIP DE DE-FOXA2-2 389 bp overlap
GATA1::TAL1 1 dataset
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 389 bp overlap
ChIP DE DE-GATA4-2 389 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 389 bp overlap
ChIP DE DE-GATA6-2 389 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 353 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 389 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 389 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 285 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 382 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 389 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 128 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 293 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 185 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 2 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 295 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 118 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 389 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 188 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 389 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 389 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 278 bp overlap
ChIP hESC GSE18292.NANOG.hESC 89 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 389 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 389 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 294 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 243 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 237 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 321 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RFX1 4 datasets
Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 369 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 252 bp overlap
ChIP K562 ENCFF421AVO 381 bp overlap
RFX2 1 dataset
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
RXRA::VDR 1 dataset
Motif DE_12h DE_12h-RXRAVDR_MA0074.1 15 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 121 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 361 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 359 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 296 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 389 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 339 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 351 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 370 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 239 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 387 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 265 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 207 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 233 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 285 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 334 bp overlap
SOX21 1 dataset
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 223 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 206 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 328 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF175 1 dataset
ChIP HEK293 GSE76494.ZNF175.HEK293 181 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 389 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
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