chr6 : 53,060,233 53,060,576
343 bp 31 TFs 3 linked genes
This 343 bp open chromatin element is linked to CILK1, FBXO9, and ENSG00000288646 and is bound by 31 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
CILK1 1.2 kb Proximal Proximity
FBXO9 4.9 kb Proximal Proximity
ENSG00000288646 5.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:53,055,233 – 53,065,576
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 174 bp overlap
BRD4 3 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 262 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 172 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 177 bp overlap
CTCF 2 datasets
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 332 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 99 bp overlap
FOXA1 2 datasets
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 75 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 161 bp overlap
GATA2 1 dataset
ChIP endothelial cell of umbilical vein ENCFF148NLK 233 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 59 bp overlap
GATA6 3 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 226 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 272 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 239 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 218 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 99 bp overlap
HOXB13 1 dataset
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 148 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 120 bp overlap
KMT2A 1 dataset
ChIP SEM GSE83671.KMT2A.SEM 217 bp overlap
MBD4 1 dataset
ChIP HepG2 ENCFF785HSD 343 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 343 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 343 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 207 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 81 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 209 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 162 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 52 bp overlap
ChIP K562 ENCFF248CGR 99 bp overlap
ChIP K562 ENCFF957ORK 99 bp overlap
RNF219 1 dataset
ChIP HepG2 ENCFF710YJO 343 bp overlap
RUNX1 2 datasets
ChIP NALM-6 GSE126300.RUNX1.NALM-6 213 bp overlap
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 243 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 237 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 240 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 108 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 249 bp overlap
TRIM25 2 datasets
ChIP K562 ENCFF376TLP 343 bp overlap
ChIP K562 ENCFF786UTW 338 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 211 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 230 bp overlap
ZSCAN22 2 datasets
ChIP HEK293 GSE76494.ZSCAN22.HEK293 259 bp overlap
ChIP HepG2 ENCFF246MVE 343 bp overlap