chr6 : 12,748,332 12,748,829
497 bp 32 TFs 1 linked gene
This 497 bp open chromatin element is linked to PHACTR1 and is bound by 32 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PHACTR1 878 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:12,743,332 – 12,753,829
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 497 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 76 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 144 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 413 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 138 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 496 bp overlap
CTCF 9 datasets
ChIP GM23338 ENCFF531QOI 393 bp overlap
ChIP GM23338 ENCFF531QOI 173 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H9 ENCFF152GTF 186 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 96 bp overlap
ChIP endodermal cell ENCFF471YCZ 117 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 213 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 168 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 59 bp overlap
EZH2 10 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 497 bp overlap
ChIP A673 ENCFF790MVL 140 bp overlap
ChIP A673 ENCFF955JRZ 160 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 225 bp overlap
ChIP T98G GSE112240.EZH2.T98G 352 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 196 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 497 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 326 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 142 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 236 bp overlap
GATA6 3 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 82 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 114 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 185 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 206 bp overlap
HSF1 2 datasets
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 133 bp overlap
ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 143 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 162 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 240 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 324 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 425 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 193 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 497 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 342 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 261 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 481 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 385 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 373 bp overlap
ChIP hESC GSE18292.NANOG.hESC 357 bp overlap
ChIP hESC GSE20650.NANOG.hESC 335 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 254 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 257 bp overlap
POU5F1 4 datasets
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 497 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 376 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 224 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 200 bp overlap
REST 2 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 339 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 174 bp overlap
RNF2 1 dataset
ChIP WA01 GSE104690.RNF2.WA01 204 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 280 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 335 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 331 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 159 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF881NFR 497 bp overlap
ChIP H1 ENCFF881NFR 433 bp overlap
ChIP H1 ENCFF881NFR 185 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 316 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 72 bp overlap
ZBTB26 1 dataset
ChIP HEK293 ENCFF752POA 115 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 193 bp overlap