chr1 : 95,582,694 – 95,583,231

537 bp 55 TFs 0 linked genes

This 537 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

55 transcription factors

ARGFX 1 dataset

Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 221 bp overlap

Arx 1 dataset

Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BRD4 1 dataset

ChIP HAP1 GSE108387.BRD4.HAP1 258 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CEBPB 1 dataset

ChIP WA01 ENCSR000EBV.CEBPB.WA01 162 bp overlap

CREBBP 1 dataset

ChIP LS180_125 GSE39277.CREBBP.LS180_125 147 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

EZH2 2 datasets

ChIP neural progenitor cell ENCFF018MKA 87 bp overlap

ChIP neural progenitor cell ENCFF018MKA 306 bp overlap

FOXA1 1 dataset

ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 104 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 340 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

JUN 1 dataset

ChIP ESC S24-ESC-d0-JUN-exp1 141 bp overlap

KLF4 1 dataset

ChIP HAP1 GSE130417.KLF4.HAP1 170 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

MAF 1 dataset

Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap

MAFA 1 dataset

Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap

MAFK 3 datasets

ChIP H1 ENCFF854XWE 285 bp overlap

ChIP HepG2 ENCFF743ZOF 241 bp overlap

ChIP WA01 ENCSR000EBS.MAFK.WA01 191 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 11 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 144 bp overlap

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 537 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 537 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 206 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 537 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 497 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 367 bp overlap

ChIP hESC GSE20650.NANOG.hESC 295 bp overlap

ChIP hESC GSE18292.NANOG.hESC 166 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

PDX1 1 dataset

ChIP hiPSC GSE125768.PDX1.hiPSC 300 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

POU5F1 5 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 537 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 462 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 141 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 313 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 463 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

RAD21 4 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 324 bp overlap

ChIP HAP1 GSE126634.RAD21.HAP1 253 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 235 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 70 bp overlap

RARA 2 datasets

ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 243 bp overlap

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 183 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 299 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000BIS.SIN3A.WA01 132 bp overlap

SMARCA4 3 datasets

ChIP WA09 GSE105028.SMARCA4.WA09 189 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 249 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 493 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 309 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 419 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 198 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 525 bp overlap

SOX10 2 datasets

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 103 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 255 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 171 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 175 bp overlap

ZNF547 1 dataset

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap