chr5 : 109,936,859 109,937,284
425 bp 51 TFs 0 linked genes
This 425 bp open chromatin element has no linked target genes and is bound by 51 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:109,931,859 – 109,942,284
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 170 bp overlap
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
ChIP OCI-Ly7 GSE44420.BACH2.OCI-Ly7 349 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD3 1 dataset
ChIP MM1-S GSE43743.BRD3.MM1-S 172 bp overlap
BRD4 10 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 177 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 275 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 425 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 425 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 425 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 425 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 279 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 425 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 425 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 383 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK8 1 dataset
ChIP MM1-S GSE43743.CDK8.MM1-S 243 bp overlap
CDK9 4 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 280 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 216 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 334 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 261 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 144 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 199 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 194 bp overlap
IRF4 5 datasets
ChIP BC-3 GSE132777.IRF4.BC-3 209 bp overlap
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 290 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 290 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 151 bp overlap
ChIP U266 GSE142493.IRF4.U266 274 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 220 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 240 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 201 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 296 bp overlap
MED1 7 datasets
ChIP MM1-S_BIORU GSE45984.MED1.MM1-S_BIORU 277 bp overlap
ChIP MM1-S_DMSO GSE36354.MED1.MM1-S_DMSO 196 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 287 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 366 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 292 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 307 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 368 bp overlap
MYB 2 datasets
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 230 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 184 bp overlap
MYC 2 datasets
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 187 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 147 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 376 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 367 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 322 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 178 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 234 bp overlap
RELA 2 datasets
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 153 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 144 bp overlap
SIX5 1 dataset
ChIP GM12878 ENCSR000BJE.SIX5.GM12878 146 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 425 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 335 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 270 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 265 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 297 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 325 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 283 bp overlap
SMAD3 1 dataset
Motif DE_12h DE_12h-SMAD3_MA0795.1 10 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 226 bp overlap
SMAD5 1 dataset
Motif DE_12h DE_12h-SMAD5_MA1557.1 10 bp overlap
STAT3 2 datasets
ChIP TMD8 GSE106844.STAT3.TMD8 80 bp overlap
ChIP TMD8_DMSO GSE123398.STAT3.TMD8_DMSO 53 bp overlap
Smad4 1 dataset
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 114 bp overlap
TCF12 3 datasets
ChIP GM12878 ENCFF506WWB 246 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 224 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 112 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 147 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 280 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 332 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 123 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap