chr1 : 91,506,066 – 91,506,387

321 bp 48 TFs 1 linked gene

This 321 bp open chromatin element is linked to CDC7 and is bound by 48 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
CDC7		5.2 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

48 transcription factors

BRD4 1 dataset

ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 119 bp overlap

Crx 1 dataset

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

Dmrt1 2 datasets

Motif DE_60h DE_60h-Dmrt1_MA1603.2 9 bp overlap

Motif DE_72h DE_72h-Dmrt1_MA1603.2 9 bp overlap

FOSL2 2 datasets

Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap

ChIP HepG2 ENCFF796NIA 213 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 321 bp overlap

ChIP DE DE-FOXA2-2 321 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 188 bp overlap

FOXP1 2 datasets

ChIP Hep-G2 ENCSR029LBT.FOXP1.Hep-G2 140 bp overlap

ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 306 bp overlap

FOXP4 1 dataset

ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 251 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 321 bp overlap

ChIP DE DE-GATA4-2 321 bp overlap

ChIP foregut GSE117136.GATA4.foregut 179 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-1 310 bp overlap

ChIP DE DE-GATA6-2 321 bp overlap

GSC 1 dataset

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

Irf1 2 datasets

Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap

Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap

KLF10 1 dataset

Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap

KLF7 1 dataset

Motif DE_72h DE_72h-KLF7_MA1959.2 8 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 247 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 271 bp overlap

OTX1 1 dataset

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap

PITX1 1 dataset

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

PRDM1 1 dataset

ChIP HEK293 ENCFF302TBP 193 bp overlap

PRDM14 1 dataset

ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap

PSIP1 1 dataset

ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 246 bp overlap

RHOXF1 1 dataset

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 321 bp overlap

SMARCA4 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 243 bp overlap

SNAI2 2 datasets

ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 200 bp overlap

ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap

SNRNP70 1 dataset

ChIP HepG2 ENCFF375TBI 69 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 112 bp overlap

SP1 1 dataset

Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap

SP4 1 dataset

Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap

SP5 2 datasets

Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap

Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap

Sox6 2 datasets

Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap

Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap

TFAP2A 2 datasets

Motif DE_72h DE_72h-TFAP2A_MA0003.5 9 bp overlap

Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap

TFAP2B 3 datasets

Motif DE_60h DE_60h-TFAP2B_MA0811.2 11 bp overlap

Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap

Motif DE_72h DE_72h-TFAP2B_MA0812.2 9 bp overlap

TFAP2C 3 datasets

Motif DE_60h DE_60h-TFAP2C_MA0524.3 11 bp overlap

Motif DE_72h DE_72h-TFAP2C_MA0524.3 11 bp overlap

Motif DE_72h DE_72h-TFAP2C_MA0814.3 9 bp overlap

TFAP2E 1 dataset

Motif DE_72h DE_72h-TFAP2E_MA1569.2 9 bp overlap

ZBTB33 1 dataset

ChIP Hep-G2 ENCSR000BNA.ZBTB33.Hep-G2 108 bp overlap

ZNF135 1 dataset

Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap

ZNF148 2 datasets

Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap

Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap

ZNF281 2 datasets

Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap

Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap

ZNF282 1 dataset

Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap

ZNF530 2 datasets

Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap

Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap

ZNF680 1 dataset

Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap

ZNF684 2 datasets

Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap

Motif DE_72h DE_72h-ZNF684_MA1600.2 14 bp overlap

Zfp809 1 dataset

Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap

Zfx 1 dataset

Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap