chr1 : 88,737,449 88,737,872
423 bp 27 TFs 0 linked genes
This 423 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:88,732,449 – 88,742,872
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 109 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 251 bp overlap
BRD4 3 datasets
ChIP 22Rv1_DHT-ABBV-744 GSE118247.BRD4.22Rv1_DHT-ABBV-744 375 bp overlap
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 230 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 234 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 171 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CTCF 14 datasets
ChIP GM23338 ENCFF772DML 69 bp overlap
ChIP H1 ENCFF414GZI 104 bp overlap
ChIP H1 ENCFF764RHO 111 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 423 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 193 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 106 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 132 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 156 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 79 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 249 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 103 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 68 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 339 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 113 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 261 bp overlap
ESR1 2 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 187 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 342 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 269 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 70 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 94 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 76 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 352 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 216 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 181 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 220 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 136 bp overlap
ChIP H1 ENCFF967OJF 138 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 423 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 172 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 219 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 66 bp overlap
RAD51 1 dataset
ChIP U2OS_UASISIER ERP001996.RAD51.U2OS_UASISIER 225 bp overlap
SFPQ 1 dataset
ChIP LTAD_siCTBP1-AS-EtOH GSE94577.SFPQ.LTAD_siCTBP1-AS-EtOH 119 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 191 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 390 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 289 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 269 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 197 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 183 bp overlap
YY1 1 dataset
ChIP HEK293T_control GSE128106.YY1.HEK293T_control 261 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 168 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap