chr1 : 86,823,245 86,823,655
410 bp 42 TFs 0 linked genes
This 410 bp open chromatin element has no linked target genes and is bound by 42 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:86,818,245 – 86,828,655
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ATF4 1 dataset
ChIP K562 ENCFF674KTF 192 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 278 bp overlap
BRD4 1 dataset
ChIP HEK293T GSE39579.BRD4.HEK293T 78 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 232 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 206 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 133 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 360 bp overlap
FOXA1 10 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 58 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 128 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 336 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 67 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 128 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 129 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 135 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 265 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 306 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 140 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 136 bp overlap
ChIP DE DE-FOXA2-1 410 bp overlap
ChIP DE DE-FOXA2-2 410 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 139 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 105 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 410 bp overlap
ChIP DE DE-GATA4-2 410 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 347 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 402 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 410 bp overlap
ChIP DE DE-GATA6-2 410 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 410 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 410 bp overlap
ChIP foregut GSE117136.GATA6.foregut 311 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 359 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 277 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HDAC1 1 dataset
ChIP HepG2 ENCFF304IEJ 410 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 134 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 192 bp overlap
MXI1 1 dataset
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 295 bp overlap
NFIC 1 dataset
ChIP Hep-G2 GSE108514.NFIC.Hep-G2 52 bp overlap
NFYA 1 dataset
ChIP K-562 GSE26439.NFYA.K-562 146 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 310 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 293 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 149 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 52 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 111 bp overlap
Prdm15 1 dataset
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Rhox11 1 dataset
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 410 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 225 bp overlap
YY1 1 dataset
ChIP liver ENCSR994YLZ.YY1.liver 173 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 155 bp overlap
ZNF274 1 dataset
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
ZNF816 2 datasets
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap
ChIP HEK293 GSE76494.ZNF816.HEK293 187 bp overlap
ZNF85 1 dataset
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
ZSCAN9 1 dataset
ChIP HepG2 ENCFF196RWJ 256 bp overlap