chr4 : 110,791,713 – 110,792,349
636 bp 55 TFs 1 linked gene
This 636 bp open chromatin element is linked to LINC01438 and is bound by 55 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01438 2.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:110,786,713 – 110,797,349
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
CHD7 1 dataset
ChIP H1 ENCFF126NLU 366 bp overlap
Crx 2 datasets
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DPRX 2 datasets
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
Dmbx1 2 datasets
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
E2F6 2 datasets
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
Motif DE_72h DE_72h-E2F6_MA0471.3 8 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 426 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 636 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 308 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 171 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 636 bp overlap
ChIP DE DE-FOXA2-2 636 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 260 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 636 bp overlap
ChIP DE DE-GATA4-2 636 bp overlap
ChIP foregut GSE117136.GATA4.foregut 593 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 248 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 636 bp overlap
ChIP DE DE-GATA6-2 636 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 636 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 636 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 636 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 636 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 636 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 636 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 636 bp overlap
GSC 2 datasets
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gli1 1 dataset
Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap
NFYA 2 datasets
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYB 2 datasets
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
NFYC 2 datasets
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
NUTM1 2 datasets
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 416 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 112 bp overlap
OTX1 2 datasets
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
PITX1 2 datasets
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 294 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 130 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP HeLa-B2_P65KD_DMSO GSE24518.RELA.HeLa-B2_P65KD_DMSO 86 bp overlap
RELB 2 datasets
Motif DE_60h DE_60h-RELB_MA1117.2 7 bp overlap
Motif DE_72h DE_72h-RELB_MA1117.2 7 bp overlap
RHOXF1 2 datasets
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORA 1 dataset
Motif DE_60h DE_60h-RORA_MA0072.2 11 bp overlap
RORC 1 dataset
Motif DE_60h DE_60h-RORC_MA1151.2 10 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 636 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 636 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 491 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 229 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 337 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 636 bp overlap
SMAD3 2 datasets
Motif DE_60h DE_60h-SMAD3_MA0795.1 10 bp overlap
Motif DE_72h DE_72h-SMAD3_MA0795.1 10 bp overlap
SMAD5 2 datasets
Motif DE_60h DE_60h-SMAD5_MA1557.1 10 bp overlap
Motif DE_72h DE_72h-SMAD5_MA1557.1 10 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 636 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 285 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 218 bp overlap
SOX13 2 datasets
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 209 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 206 bp overlap
SOX2 2 datasets
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
Smad4 2 datasets
Motif DE_60h DE_60h-Smad4_MA1153.2 7 bp overlap
Motif DE_72h DE_72h-Smad4_MA1153.2 7 bp overlap
Sox17 2 datasets
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 2 datasets
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 2 datasets
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBX18 2 datasets
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX20 2 datasets
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
Tbx6 2 datasets
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 155 bp overlap
ZIC1 2 datasets
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZKSCAN1 2 datasets
Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_72h DE_72h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF75D 2 datasets
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_72h DE_72h-ZNF75D_MA1601.2 12 bp overlap
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