chr4 : 72,037,529 – 72,038,216
687 bp 35 TFs 1 linked gene
This 687 bp open chromatin element is linked to NPFFR2 and is bound by 35 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NPFFR2 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:72,032,529 – 72,043,216
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 204 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 207 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 314 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 120 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 145 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 187 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 186 bp overlap
ESR1 10 datasets
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 220 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 81 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 331 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 176 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 331 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 224 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 246 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 280 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 192 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 206 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 284 bp overlap
FOXA1 34 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 389 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 447 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 161 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 134 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 161 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 399 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 133 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 194 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 280 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 149 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 214 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 216 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 220 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 198 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 372 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 266 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 198 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 197 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 568 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 525 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 564 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 582 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 473 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 310 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 123 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 276 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 253 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 608 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 214 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 687 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 659 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 640 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 324 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 317 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 326 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 255 bp overlap
ChIP DE DE-FOXA2-1 687 bp overlap
ChIP DE DE-FOXA2-2 687 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 381 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 216 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 216 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE51274.GATA3.MCF-7 223 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 219 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 224 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 407 bp overlap
ChIP DE DE-GATA4-2 586 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 254 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 340 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 327 bp overlap
ChIP DE DE-GATA6-2 604 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 292 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 166 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 65 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 245 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 239 bp overlap
JUN 1 dataset
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 186 bp overlap
MITF 2 datasets
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 235 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 204 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 169 bp overlap
NR3C1 3 datasets
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 157 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 379 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 207 bp overlap
NR3C1_mut 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 267 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 206 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 395 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 517 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 577 bp overlap
RAD21 1 dataset
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 121 bp overlap
RELA 3 datasets
ChIP LNCaP_DHT_TNFA GSE83860.RELA.LNCaP_DHT_TNFA 229 bp overlap
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 246 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 221 bp overlap
RFX1 1 dataset
ChIP K-562 ENCSR968GIB.RFX1.K-562 249 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 222 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 255 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 340 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 185 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 282 bp overlap
STAT3 2 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 208 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 254 bp overlap
TCF12 1 dataset
ChIP MCF-7 ENCSR000BUN.TCF12.MCF-7 233 bp overlap
TEAD4 2 datasets
ChIP MCF-7_ICI GSE125594.TEAD4.MCF-7_ICI 195 bp overlap
ChIP MCF-7_Veh GSE125594.TEAD4.MCF-7_Veh 358 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 165 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 163 bp overlap
YY1AP1 3 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 357 bp overlap
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 289 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 240 bp overlap
ZNF263 1 dataset
ChIP HEK293 GSE76494.ZNF263.HEK293 125 bp overlap
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