chr4 : 42,316,137 – 42,316,972
835 bp 84 TFs 1 linked gene
This 835 bp open chromatin element is linked to BEND4 and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BEND4 163.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:42,311,137 – 42,321,972
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ALX3 2 datasets
Motif DE_48h DE_48h-ALX3_MA0634.2 6 bp overlap
Motif DE_60h DE_60h-ALX3_MA0634.2 6 bp overlap
ARGFX 2 datasets
Motif DE_48h DE_48h-ARGFX_MA1463.2 8 bp overlap
Motif DE_60h DE_60h-ARGFX_MA1463.2 8 bp overlap
DRGX 2 datasets
Motif DE_48h DE_48h-DRGX_MA1481.2 6 bp overlap
Motif DE_60h DE_60h-DRGX_MA1481.2 6 bp overlap
DUXA 2 datasets
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dux 2 datasets
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EMX1 2 datasets
Motif DE_48h DE_48h-EMX1_MA0612.3 6 bp overlap
Motif DE_60h DE_60h-EMX1_MA0612.3 6 bp overlap
EMX2 2 datasets
Motif DE_48h DE_48h-EMX2_MA0886.2 6 bp overlap
Motif DE_60h DE_60h-EMX2_MA0886.2 6 bp overlap
EN1 2 datasets
Motif DE_48h DE_48h-EN1_MA0027.3 6 bp overlap
Motif DE_60h DE_60h-EN1_MA0027.3 6 bp overlap
ESX1 2 datasets
Motif DE_48h DE_48h-ESX1_MA0644.3 7 bp overlap
Motif DE_60h DE_60h-ESX1_MA0644.3 7 bp overlap
EVX1 2 datasets
Motif DE_48h DE_48h-EVX1_MA0887.2 6 bp overlap
Motif DE_60h DE_60h-EVX1_MA0887.2 6 bp overlap
EVX2 2 datasets
Motif DE_48h DE_48h-EVX2_MA0888.2 6 bp overlap
Motif DE_60h DE_60h-EVX2_MA0888.2 6 bp overlap
FOXA1 1 dataset
ChIP MCF-7 ENCFF465LTH 187 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 240 bp overlap
ChIP DE DE-FOXA2-1 491 bp overlap
ChIP DE DE-FOXA2-2 835 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 530 bp overlap
ChIP DE DE-GATA4-2 835 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 602 bp overlap
ChIP DE DE-GATA6-2 835 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 423 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 694 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 329 bp overlap
GSX1 2 datasets
Motif DE_48h DE_48h-GSX1_MA0892.2 6 bp overlap
Motif DE_60h DE_60h-GSX1_MA0892.2 6 bp overlap
GSX2 2 datasets
Motif DE_48h DE_48h-GSX2_MA0893.3 7 bp overlap
Motif DE_60h DE_60h-GSX2_MA0893.3 7 bp overlap
HOXA1 2 datasets
Motif DE_48h DE_48h-HOXA1_MA1495.2 6 bp overlap
Motif DE_60h DE_60h-HOXA1_MA1495.2 6 bp overlap
HOXA2 2 datasets
Motif DE_48h DE_48h-HOXA2_MA0900.3 6 bp overlap
Motif DE_60h DE_60h-HOXA2_MA0900.3 6 bp overlap
HOXA3 2 datasets
Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap
Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap
HOXA5 2 datasets
Motif DE_48h DE_48h-HOXA5_MA0158.2 8 bp overlap
Motif DE_60h DE_60h-HOXA5_MA0158.2 8 bp overlap
HOXA6 2 datasets
Motif DE_48h DE_48h-HOXA6_MA1497.2 7 bp overlap
Motif DE_60h DE_60h-HOXA6_MA1497.2 7 bp overlap
HOXB1 2 datasets
Motif DE_48h DE_48h-HOXB1_MA2093.1 7 bp overlap
Motif DE_60h DE_60h-HOXB1_MA2093.1 7 bp overlap
HOXB2 2 datasets
Motif DE_48h DE_48h-HOXB2_MA0902.3 6 bp overlap
Motif DE_60h DE_60h-HOXB2_MA0902.3 6 bp overlap
HOXB3 2 datasets
Motif DE_48h DE_48h-HOXB3_MA0903.2 6 bp overlap
Motif DE_60h DE_60h-HOXB3_MA0903.2 6 bp overlap
HOXB5 2 datasets
Motif DE_48h DE_48h-HOXB5_MA0904.3 6 bp overlap
Motif DE_60h DE_60h-HOXB5_MA0904.3 6 bp overlap
HOXB6 2 datasets
Motif DE_48h DE_48h-HOXB6_MA1500.2 7 bp overlap
Motif DE_60h DE_60h-HOXB6_MA1500.2 7 bp overlap
HOXB7 2 datasets
Motif DE_48h DE_48h-HOXB7_MA1501.2 7 bp overlap
Motif DE_60h DE_60h-HOXB7_MA1501.2 7 bp overlap
HOXB8 2 datasets
Motif DE_48h DE_48h-HOXB8_MA1502.2 7 bp overlap
Motif DE_60h DE_60h-HOXB8_MA1502.2 7 bp overlap
HOXC8 2 datasets
Motif DE_48h DE_48h-HOXC8_MA1505.2 6 bp overlap
Motif DE_60h DE_60h-HOXC8_MA1505.2 6 bp overlap
HOXD3 2 datasets
Motif DE_48h DE_48h-HOXD3_MA0912.2 8 bp overlap
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
HOXD8 2 datasets
Motif DE_48h DE_48h-HOXD8_MA0910.3 7 bp overlap
Motif DE_60h DE_60h-HOXD8_MA0910.3 7 bp overlap
ISL2 1 dataset
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
ISX 2 datasets
Motif DE_48h DE_48h-ISX_MA0654.2 6 bp overlap
Motif DE_60h DE_60h-ISX_MA0654.2 6 bp overlap
LHX5 2 datasets
Motif DE_48h DE_48h-LHX5_MA1519.2 7 bp overlap
Motif DE_60h DE_60h-LHX5_MA1519.2 7 bp overlap
LHX6 2 datasets
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
LMX1A 2 datasets
Motif DE_48h DE_48h-LMX1A_MA0702.3 7 bp overlap
Motif DE_60h DE_60h-LMX1A_MA0702.3 7 bp overlap
LMX1B 2 datasets
Motif DE_48h DE_48h-LMX1B_MA0703.3 8 bp overlap
Motif DE_60h DE_60h-LMX1B_MA0703.3 8 bp overlap
Lhx1 2 datasets
Motif DE_48h DE_48h-Lhx1_MA1518.3 10 bp overlap
Motif DE_60h DE_60h-Lhx1_MA1518.3 10 bp overlap
Lhx4 2 datasets
Motif DE_48h DE_48h-Lhx4_MA0704.2 6 bp overlap
Motif DE_60h DE_60h-Lhx4_MA0704.2 6 bp overlap
Lhx8 2 datasets
Motif DE_48h DE_48h-Lhx8_MA0705.2 6 bp overlap
Motif DE_60h DE_60h-Lhx8_MA0705.2 6 bp overlap
MEOX1 2 datasets
Motif DE_48h DE_48h-MEOX1_MA0661.2 7 bp overlap
Motif DE_60h DE_60h-MEOX1_MA0661.2 7 bp overlap
MEOX2 2 datasets
Motif DE_48h DE_48h-MEOX2_MA0706.2 7 bp overlap
Motif DE_60h DE_60h-MEOX2_MA0706.2 7 bp overlap
MIXL1 2 datasets
Motif DE_48h DE_48h-MIXL1_MA0662.2 6 bp overlap
Motif DE_60h DE_60h-MIXL1_MA0662.2 6 bp overlap
MNX1 2 datasets
Motif DE_48h DE_48h-MNX1_MA0707.3 6 bp overlap
Motif DE_60h DE_60h-MNX1_MA0707.3 6 bp overlap
NKX6-1 2 datasets
Motif DE_48h DE_48h-NKX6-1_MA0674.2 7 bp overlap
Motif DE_60h DE_60h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 2 datasets
Motif DE_48h DE_48h-NKX6-2_MA0675.2 6 bp overlap
Motif DE_60h DE_60h-NKX6-2_MA0675.2 6 bp overlap
NOTO 2 datasets
Motif DE_48h DE_48h-NOTO_MA0710.2 7 bp overlap
Motif DE_60h DE_60h-NOTO_MA0710.2 7 bp overlap
PDX1 2 datasets
Motif DE_48h DE_48h-PDX1_MA0132.3 6 bp overlap
Motif DE_60h DE_60h-PDX1_MA0132.3 6 bp overlap
POU1F1 2 datasets
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_48h DE_48h-POU2F1_MA0785.2 9 bp overlap
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU2F2 2 datasets
Motif DE_48h DE_48h-POU2F2_MA0507.3 13 bp overlap
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU3F1 2 datasets
Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_48h DE_48h-POU3F4_MA0789.1 9 bp overlap
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
POU5F1B 2 datasets
Motif DE_48h DE_48h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_60h DE_60h-POU5F1B_MA0792.1 9 bp overlap
POU6F1 2 datasets
Motif DE_48h DE_48h-POU6F1_MA0628.2 6 bp overlap
Motif DE_60h DE_60h-POU6F1_MA0628.2 6 bp overlap
PRRX1 2 datasets
Motif DE_48h DE_48h-PRRX1_MA0716.2 6 bp overlap
Motif DE_60h DE_60h-PRRX1_MA0716.2 6 bp overlap
RAX2 2 datasets
Motif DE_48h DE_48h-RAX2_MA0717.2 6 bp overlap
Motif DE_60h DE_60h-RAX2_MA0717.2 6 bp overlap
SHOX 2 datasets
Motif DE_48h DE_48h-SHOX_MA0630.2 6 bp overlap
Motif DE_60h DE_60h-SHOX_MA0630.2 6 bp overlap
SIX1 1 dataset
Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap
SOX10 2 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX13 2 datasets
Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 333 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 428 bp overlap
SOX2 2 datasets
Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
Shox2 2 datasets
Motif DE_48h DE_48h-Shox2_MA0720.2 6 bp overlap
Motif DE_60h DE_60h-Shox2_MA0720.2 6 bp overlap
Six4 1 dataset
Motif DE_48h DE_48h-Six4_MA2001.2 7 bp overlap
Sox17 2 datasets
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox3 2 datasets
Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
TLX2 2 datasets
Motif DE_48h DE_48h-TLX2_MA1577.2 6 bp overlap
Motif DE_60h DE_60h-TLX2_MA1577.2 6 bp overlap
UNCX 2 datasets
Motif DE_48h DE_48h-UNCX_MA0721.2 6 bp overlap
Motif DE_60h DE_60h-UNCX_MA0721.2 6 bp overlap
VAX1 2 datasets
Motif DE_48h DE_48h-VAX1_MA0722.2 7 bp overlap
Motif DE_60h DE_60h-VAX1_MA0722.2 7 bp overlap
VAX2 2 datasets
Motif DE_48h DE_48h-VAX2_MA0723.3 6 bp overlap
Motif DE_60h DE_60h-VAX2_MA0723.3 6 bp overlap
VSX1 2 datasets
Motif DE_48h DE_48h-VSX1_MA0725.2 7 bp overlap
Motif DE_60h DE_60h-VSX1_MA0725.2 7 bp overlap
VSX2 2 datasets
Motif DE_48h DE_48h-VSX2_MA0726.2 7 bp overlap
Motif DE_60h DE_60h-VSX2_MA0726.2 7 bp overlap
ZNF384 2 datasets
Motif DE_48h DE_48h-ZNF384_MA1125.2 8 bp overlap
Motif DE_60h DE_60h-ZNF384_MA1125.2 8 bp overlap
ZNF675 2 datasets
Motif DE_48h DE_48h-ZNF675_MA1714.2 19 bp overlap
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
ZNF680 3 datasets
Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
Motif DE_72h DE_72h-ZNF680_MA1729.2 11 bp overlap
ZNF766 1 dataset
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap
ZNF784 1 dataset
Motif DE_48h DE_48h-ZNF784_MA1717.2 8 bp overlap
mix-a 2 datasets
Motif DE_48h DE_48h-mix-a_MA0621.2 7 bp overlap
Motif DE_60h DE_60h-mix-a_MA0621.2 7 bp overlap
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