chr3 : 79,368,431 – 79,368,722
291 bp 57 TFs 0 linked genes
This 291 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:79,363,431 – 79,373,722
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
AR 11 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 169 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 157 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 163 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 231 bp overlap
ChIP MDA-MB-453_MPA GSE74069.AR.MDA-MB-453_MPA 144 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 193 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 200 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 90 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.AR.breast-cancer_ENOB-2852 202 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 191 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 138 bp overlap
BRD4 1 dataset
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 291 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CHD1 1 dataset
ChIP LNCaP_DHT GSE64528.CHD1.LNCaP_DHT 54 bp overlap
CHD4 1 dataset
ChIP keratinocyte_CTR GSE139685.CHD4.keratinocyte_CTR 181 bp overlap
CTCF 1 dataset
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 115 bp overlap
DMRTC2 1 dataset
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
ESR1 5 datasets
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 157 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 230 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 237 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 200 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 291 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 291 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 264 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1::DRGX 1 dataset
Motif DE_12h DE_12h-FLI1DRGX_MA1949.2 14 bp overlap
FOXA1 9 datasets
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 188 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 246 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 201 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 265 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 251 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 248 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 217 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 271 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 257 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 176 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA3 2 datasets
ChIP T-47D ENCSR000BMX.GATA3.T-47D 176 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 53 bp overlap
GRHL2 5 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
ChIP HBE GSE46194.GRHL2.HBE 232 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 208 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 116 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 179 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 173 bp overlap
HOXB13 4 datasets
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 172 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 202 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 254 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 132 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 268 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 171 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 125 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 218 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 133 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 122 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 215 bp overlap
NKX2-1 1 dataset
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 129 bp overlap
NR3C1 2 datasets
ChIP HCC1937 GSE152203.NR3C1.HCC1937 169 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 158 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 224 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 174 bp overlap
PGR 5 datasets
ChIP T-47D GSE31129.PGR.T-47D 291 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 270 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 261 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 198 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 250 bp overlap
RBPJ 2 datasets
ChIP HCC1599 GSE116871.RBPJ.HCC1599 291 bp overlap
ChIP MDA-MB-157 GSE116868.RBPJ.MDA-MB-157 259 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 241 bp overlap
RFX7 1 dataset
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
RUNX1 1 dataset
ChIP keratinocyte GSE98483.RUNX1.keratinocyte 201 bp overlap
RUNX2 1 dataset
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 291 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 88 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 121 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 145 bp overlap
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 88 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 201 bp overlap
STAT3 3 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 157 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 213 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 178 bp overlap
TEAD4 2 datasets
ChIP MKN28 GSE44416.TEAD4.MKN28 190 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 208 bp overlap
TP63 4 datasets
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 178 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 178 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 137 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 210 bp overlap
YY1AP1 4 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 291 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 291 bp overlap
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 225 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 187 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 135 bp overlap
ZNF175 2 datasets
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ChIP HEK293 GSE76494.ZNF175.HEK293 154 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 291 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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