chr3 : 78,221,904 78,222,361
457 bp 50 TFs 0 linked genes
This 457 bp open chromatin element has no linked target genes and is bound by 50 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:78,216,904 – 78,227,361
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
Atoh1 1 dataset
Motif DE_24h DE_24h-Atoh1_MA1467.3 7 bp overlap
CREB1 1 dataset
Motif DE_24h DE_24h-CREB1_MA0018.5 8 bp overlap
CTCF 2 datasets
ChIP VCaP ENCFF858YQT 130 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 123 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 441 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 165 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 255 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 352 bp overlap
ChIP DE DE-GATA4-2 418 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 404 bp overlap
ChIP DE DE-GATA6-2 431 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 329 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 318 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 405 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 347 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 415 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 319 bp overlap
HAND2 1 dataset
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
JUN 7 datasets
Motif DE_24h DE_24h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 346 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 406 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 376 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 232 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 325 bp overlap
ChIP keratinocyte_CHD4-KD GSE139685.JUN.keratinocyte_CHD4-KD 107 bp overlap
KLF9 1 dataset
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
MAFF 1 dataset
Motif DE_24h DE_24h-MAFF_MA0495.4 11 bp overlap
MEIS1 2 datasets
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MTF1 1 dataset
Motif DE_24h DE_24h-MTF1_MA0863.1 14 bp overlap
Mafb 1 dataset
Motif DE_24h DE_24h-Mafb_MA0117.3 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 142 bp overlap
NR2C1 1 dataset
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NR2F1 3 datasets
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Motif DE_24h DE_24h-NR2F1_MA0017.3 12 bp overlap
Motif DE_24h DE_24h-NR2F1_MA1537.2 13 bp overlap
NRL 1 dataset
Motif DE_24h DE_24h-NRL_MA0842.3 12 bp overlap
Nr1H2 1 dataset
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Nr2f6 2 datasets
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 393 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 67 bp overlap
RREB1 1 dataset
Motif DE_24h DE_24h-RREB1_MA0073.2 19 bp overlap
RXRB 1 dataset
Motif DE_24h DE_24h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_24h DE_24h-RXRG_MA0856.1 14 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Rxra 1 dataset
Motif DE_24h DE_24h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 355 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 308 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 296 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 288 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 305 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 347 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 379 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 252 bp overlap
TEAD1 1 dataset
Motif DE_24h DE_24h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_24h DE_24h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_24h DE_24h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_24h DE_24h-TEAD4_MA0809.3 8 bp overlap
THRB 1 dataset
Motif DE_24h DE_24h-THRB_MA1574.2 13 bp overlap
ZNF449 1 dataset
Motif DE_24h DE_24h-ZNF449_MA1656.2 10 bp overlap
ZNF684 1 dataset
Motif DE_24h DE_24h-ZNF684_MA1600.2 14 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF816 1 dataset
Motif DE_24h DE_24h-ZNF816_MA1719.2 15 bp overlap
ZSCAN4 3 datasets
Motif DE_24h DE_24h-ZSCAN4_MA1155.1 15 bp overlap
ChIP HEK293 ENCFF381BKT 309 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 220 bp overlap