chr3 : 26,050,349 – 26,051,332
983 bp 57 TFs 0 linked genes
This 983 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:26,045,349 – 26,056,332
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
BHLHE22 2 datasets
Motif DE_24h DE_24h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Bhlha15 2 datasets
Motif DE_24h DE_24h-Bhlha15_MA1472.3 8 bp overlap
Motif DE_36h DE_36h-Bhlha15_MA1472.3 8 bp overlap
CEBPD 3 datasets
Motif DE_24h DE_24h-CEBPD_MA0836.3 8 bp overlap
Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap
Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap
CTCF 9 datasets
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP brain ENCFF163BBN 591 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 239 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 195 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 285 bp overlap
ChIP heart left ventricle ENCFF987PUT 371 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 393 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 153 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 250 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 552 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 785 bp overlap
ChIP DE DE-FOXA2-2 691 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 110 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 811 bp overlap
ChIP DE DE-GATA4-2 662 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 747 bp overlap
ChIP DE DE-GATA6-2 689 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 719 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 754 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 834 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 836 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 796 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 849 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 638 bp overlap
GFI1 3 datasets
Motif DE_24h DE_24h-GFI1_MA0038.3 11 bp overlap
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Gfi1B 3 datasets
Motif DE_24h DE_24h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
Hnf1A 1 dataset
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
IRF4 1 dataset
Motif DE_36h DE_36h-IRF4_MA1419.2 14 bp overlap
IRF6 1 dataset
Motif DE_36h DE_36h-IRF6_MA1509.1 9 bp overlap
IRF7 1 dataset
Motif DE_36h DE_36h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_36h DE_36h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_36h DE_36h-IRF9_MA0653.1 15 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 454 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 356 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 631 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 397 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 603 bp overlap
Lef1 1 dataset
Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap
MYF5 2 datasets
Motif DE_24h DE_24h-MYF5_MA1641.2 8 bp overlap
Motif DE_36h DE_36h-MYF5_MA1641.2 8 bp overlap
NEUROD1 2 datasets
Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_36h DE_36h-NEUROD1_MA1109.2 8 bp overlap
Neurod2 4 datasets
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Motif DE_24h DE_24h-Neurod2_MA1993.2 6 bp overlap
Motif DE_36h DE_36h-Neurod2_MA0668.3 8 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
ONECUT1 1 dataset
ChIP H9 ERP004206.ONECUT1.H9 184 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 179 bp overlap
Olig2 2 datasets
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Ptf1A 2 datasets
Motif DE_24h DE_24h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap
RAD21 2 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 162 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 128 bp overlap
SATB1 1 dataset
Motif DE_36h DE_36h-SATB1_MA1963.2 7 bp overlap
SIX1 1 dataset
Motif DE_36h DE_36h-SIX1_MA1118.2 9 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 449 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 849 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 798 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 684 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 801 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 680 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 773 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 688 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 198 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 178 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 248 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 592 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 263 bp overlap
STAG1 1 dataset
ChIP MCF-7 ERP000209.STAG1.MCF-7 138 bp overlap
STAT1 1 dataset
Motif DE_36h DE_36h-STAT1_MA0137.4 9 bp overlap
STAT1::STAT2 1 dataset
Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap
Stat4 1 dataset
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_36h DE_36h-Stat5aStat5b_MA0519.2 9 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 319 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 334 bp overlap
TCF7 1 dataset
Motif DE_36h DE_36h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Tcf12 2 datasets
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
ZBTB18 2 datasets
Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
ZNF384 2 datasets
Motif DE_24h DE_24h-ZNF384_MA1125.2 8 bp overlap
Motif DE_36h DE_36h-ZNF384_MA1125.2 8 bp overlap
ZNF558 1 dataset
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif DE_36h DE_36h-ZNF582_MA1983.2 19 bp overlap
ZNF75A 1 dataset
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
Zfp335 1 dataset
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Zic2 2 datasets
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Znf423 2 datasets
Motif DE_24h DE_24h-Znf423_MA0116.1 15 bp overlap
Motif DE_36h DE_36h-Znf423_MA0116.1 15 bp overlap
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