chr3 : 22,691,294 – 22,691,715

421 bp 62 TFs 0 linked genes

This 421 bp open chromatin element has no linked target genes and is bound by 62 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

62 transcription factors

Atoh1 2 datasets

Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap

Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap

Bach1::Mafk 1 dataset

Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 398 bp overlap

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 217 bp overlap

CREB1 1 dataset

ChIP WA01 ENCSR000BSN.CREB1.WA01 201 bp overlap

CTCF 2 datasets

Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap

Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF335XTP 320 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 193 bp overlap

ESR1 1 dataset

ChIP MCF-7 GSE68356.ESR1.MCF-7 195 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 189 bp overlap

GATA1 2 datasets

Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap

Motif ES_0h ES_0h-GATA1_MA0035.5 7 bp overlap

HAND2 2 datasets

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap

IKZF2 2 datasets

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap

IRF4 1 dataset

ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 189 bp overlap

JUN 1 dataset

ChIP ESC S24-ESC-d0-JUN-exp1 248 bp overlap

MAFF 2 datasets

Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap

Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap

MXI1 2 datasets

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap

Mafb 2 datasets

Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap

Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap

NANOG 6 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 326 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 244 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 228 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 215 bp overlap

ChIP hESC GSE20650.NANOG.hESC 151 bp overlap

ChIP hESC GSE18292.NANOG.hESC 131 bp overlap

NCOA2 1 dataset

ChIP MCF-7 ERP000901.NCOA2.MCF-7 168 bp overlap

NEUROD1 2 datasets

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 2 datasets

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap

NFATC3 2 datasets

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap

Neurod2 2 datasets

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap

Nfatc1 2 datasets

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap

POU2F1 2 datasets

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU3F1 2 datasets

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 2 datasets

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F4 2 datasets

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap

POU5F1 5 datasets

ChIP H1 ENCFF698ZAP 164 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 304 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 219 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 220 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 206 bp overlap

POU5F1B 2 datasets

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

Prdm15 1 dataset

Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap

Prdm4 2 datasets

Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap

Motif ES_0h ES_0h-Prdm4_MA1647.3 11 bp overlap

Prdm5 1 dataset

Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap

RARA 1 dataset

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 303 bp overlap

REL 2 datasets

Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap

Motif ES_0h ES_0h-REL_MA0101.1 10 bp overlap

SMAD2 1 dataset

Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap

SMARCA4 2 datasets

ChIP NSC GSE125033.SMARCA4.NSC 340 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 210 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 219 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 220 bp overlap

SOX15 2 datasets

Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap

Motif ES_0h ES_0h-SOX15_MA1152.2 7 bp overlap

SOX2 3 datasets

ChIP HNSC GSE69479.SOX2.HNSC 284 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 278 bp overlap

ChIP hiPSC GSE67282.SOX2.hiPSC 220 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 155 bp overlap

SP5 2 datasets

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap

SPIB 2 datasets

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap

STAT1::STAT2 2 datasets

Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap

Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap

STAT3 2 datasets

Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap

Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap

Sox11 2 datasets

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap

Stat5b 2 datasets

Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap

Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap

TAF1 2 datasets

ChIP H1 ENCFF478SZO 421 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 143 bp overlap

TBP 3 datasets

ChIP H1 ENCFF859IIO 348 bp overlap

ChIP hESC GSE122298.TBP.hESC 143 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 122 bp overlap

TCF12 1 dataset

ChIP H1 ENCFF203EBH 251 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 235 bp overlap

ZBTB26 2 datasets

Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap

Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap

ZIM3 2 datasets

Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap

Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap

ZKSCAN5 2 datasets

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF138 1 dataset

ChIP WTC11 ENCFF800FUU 303 bp overlap

ZNF157 2 datasets

Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap

Motif ES_0h ES_0h-ZNF157_MA2331.1 21 bp overlap

ZSCAN31 1 dataset

Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap