chr2 : 217,433,581 217,433,887
306 bp 49 TFs 1 linked gene
This 306 bp open chromatin element is linked to DIRC3 and is bound by 49 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
DIRC3 328 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:217,428,581 – 217,438,887
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 239 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 157 bp overlap
BRD4 7 datasets
ChIP BE2C GSE80151.BRD4.BE2C 164 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 306 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 213 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 164 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 218 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 119 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 216 bp overlap
CDK8 5 datasets
ChIP leiomyoma_PT848 GSE128230.CDK8.leiomyoma_PT848 99 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 90 bp overlap
ChIP leiomyoma_PT967 GSE128230.CDK8.leiomyoma_PT967 98 bp overlap
ChIP myometrium_PT848 GSE128230.CDK8.myometrium_PT848 58 bp overlap
ChIP myometrium_PT886 GSE128230.CDK8.myometrium_PT886 103 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 256 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 280 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 168 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 306 bp overlap
ETS1 2 datasets
ChIP THP-6_shEts1 GSE138516.ETS1.THP-6_shEts1 222 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 205 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 301 bp overlap
FOS 1 dataset
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 65 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 306 bp overlap
ChIP DE DE-FOXA2-2 306 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 194 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 148 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 306 bp overlap
ChIP DE DE-GATA4-2 306 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 153 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 262 bp overlap
ChIP foregut GSE117136.GATA4.foregut 272 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 306 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 284 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 276 bp overlap
ChIP DE DE-GATA6-2 306 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 306 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 291 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 301 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 236 bp overlap
ChIP H9 ERP004206.GATA6.H9 231 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 306 bp overlap
ChIP foregut GSE117136.GATA6.foregut 288 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 276 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 306 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 238 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 207 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 168 bp overlap
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 140 bp overlap
JUN 2 datasets
ChIP leiomyoma_PT848 GSE128230.JUN.leiomyoma_PT848 101 bp overlap
ChIP myometrium_PT886 GSE128230.JUN.myometrium_PT886 73 bp overlap
MED1 2 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 306 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 241 bp overlap
MED12 4 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 93 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 93 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 95 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 86 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 306 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 239 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 135 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 235 bp overlap
PBX3 2 datasets
ChIP GM12878 ENCFF285BQQ 217 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 152 bp overlap
PDX1 5 datasets
ChIP H9 ERP004206.PDX1.H9 182 bp overlap
ChIP hESC GSE58685.PDX1.hESC 233 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 306 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 306 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 306 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 237 bp overlap
POLR2A 6 datasets
ChIP adrenal gland ENCFF843OBJ 306 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 184 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 221 bp overlap
ChIP prostate gland ENCFF881OMH 285 bp overlap
ChIP sigmoid colon ENCFF748YVT 269 bp overlap
ChIP sigmoid colon ENCFF754JQR 232 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 169 bp overlap
RBPJ 1 dataset
ChIP THP-6_shCtrl GSE138516.RBPJ.THP-6_shCtrl 242 bp overlap
RFX5 4 datasets
ChIP Hep-G2 ENCSR000EEA.RFX5.Hep-G2 306 bp overlap
ChIP IMR-90 ENCSR000EFD.RFX5.IMR-90 93 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 306 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 306 bp overlap
RFXAP 1 dataset
ChIP Hep-G2 ENCSR524RLU.RFXAP.Hep-G2 306 bp overlap
RUNX2 1 dataset
ChIP PER-117 GSE151819.RUNX2.PER-117 202 bp overlap
RUVBL2 1 dataset
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 198 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 306 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 224 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 242 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 201 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 148 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 176 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 306 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 210 bp overlap
SNAI2 3 datasets
ChIP RD GSE137168.SNAI2.RD 235 bp overlap
ChIP SK-N-SH ENCFF449PID 159 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 137 bp overlap
STAT5B 1 dataset
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 184 bp overlap
TBX21 1 dataset
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 100 bp overlap
TBX5 4 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 290 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 101 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 101 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 209 bp overlap
TEAD1 2 datasets
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 286 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 171 bp overlap
YY1 5 datasets
ChIP H1 ENCFF524BTL 158 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 247 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 67 bp overlap
ChIP NT2/D1 ENCFF999MII 158 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 67 bp overlap
ZMIZ1 2 datasets
ChIP THP-6_shCtrl GSE138516.ZMIZ1.THP-6_shCtrl 286 bp overlap
ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 306 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 153 bp overlap
ZNF680 1 dataset
ChIP HEK293 ENCFF418WHE 192 bp overlap