chr1 : 47,523,548 47,524,329
781 bp 53 TFs 2 linked genes
This 781 bp open chromatin element is linked to CMPK1 and STIL and is bound by 53 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CMPK1 190.3 kb Distal Multiome
STIL 209.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:47,518,548 – 47,529,329
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 131 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 133 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 781 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 272 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 674 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 781 bp overlap
BRD4 4 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 557 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 495 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 781 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 622 bp overlap
CTCF 6 datasets
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 120 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 169 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 177 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 153 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 68 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 518 bp overlap
EZH2 2 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 305 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 317 bp overlap
FERD3L 1 dataset
Motif DE_36h DE_36h-FERD3L_MA1485.1 14 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 357 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 457 bp overlap
ChIP DE DE-FOXA2-2 781 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 492 bp overlap
ChIP DE DE-GATA4-2 619 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 328 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 388 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 443 bp overlap
ChIP DE DE-GATA6-2 590 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 553 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 565 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 691 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 552 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 701 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 723 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 542 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 310 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCFF299RSE 107 bp overlap
HAND2 1 dataset
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 299 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 297 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 459 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 131 bp overlap
KDM1A 1 dataset
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 186 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 259 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 384 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 572 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 302 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 228 bp overlap
NKX2-1 2 datasets
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 54 bp overlap
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 218 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 201 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 294 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 325 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 299 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 320 bp overlap
PHOX2B 1 dataset
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 136 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 350 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 316 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 191 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 458 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 446 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 147 bp overlap
RAD21 8 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 130 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP MCF-7 ENCFF694KOM 337 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 169 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 135 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 266 bp overlap
ChIP liver ENCFF485PAC 457 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 135 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 135 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 202 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 112 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 112 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 230 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 366 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 762 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 684 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 602 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 478 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 675 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 603 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 635 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 672 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 174 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 428 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 298 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 491 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 176 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 525 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 781 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 248 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 268 bp overlap
TAL1 1 dataset
ChIP K-562 GSE107726.TAL1.K-562 165 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 162 bp overlap
ZBTB33 1 dataset
ChIP liver ENCFF592BJA 53 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 61 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 146 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 228 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 216 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 118 bp overlap