chr1 : 47,444,077 47,444,297
220 bp 40 TFs 2 linked genes
This 220 bp open chromatin element is linked to FOXD2 and FOXD2-AS1 and is bound by 40 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
FOXD2 6.0 kb Proximal Proximity
FOXD2-AS1 9.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:47,439,077 – 47,449,297
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
ARID2 2 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 216 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 220 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 220 bp overlap
BRD4 4 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 184 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 98 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 104 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 220 bp overlap
CBX7 3 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 220 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.CBX7.HEK293T_PCGF2fl_OHT 197 bp overlap
ChIP lymphocyte_UNC4976 GSE110139.CBX7.lymphocyte_UNC4976 206 bp overlap
CBX8 2 datasets
ChIP K562 ENCFF485TBL 67 bp overlap
ChIP K562 ENCFF485TBL 220 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 81 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 132 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 102 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 220 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 220 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 103 bp overlap
EGR1 1 dataset
ChIP K-562 ENCSR000BNE.EGR1.K-562 121 bp overlap
EZH2 15 datasets
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 220 bp overlap
ChIP GM23338 ENCFF613YON 220 bp overlap
ChIP GM23338 ENCFF886DXX 101 bp overlap
ChIP H1 ENCFF232NZA 220 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 114 bp overlap
ChIP astrocyte ENCFF365JTP 220 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 92 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 220 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 220 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 142 bp overlap
ChIP hepatocyte ENCFF118DKH 189 bp overlap
ChIP hepatocyte ENCFF552DZB 220 bp overlap
ChIP neural cell ENCFF610EPB 220 bp overlap
ChIP neural progenitor cell ENCFF018MKA 220 bp overlap
ChIP neural progenitor cell ENCFF472NFV 220 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 211 bp overlap
HNRNPLL 1 dataset
ChIP K562 ENCFF598PWW 186 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 162 bp overlap
MTF2 2 datasets
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 56 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 81 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 220 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 108 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 84 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 64 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 220 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 164 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 80 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 184 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 89 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 220 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 220 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 220 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 220 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 212 bp overlap
RNF2 11 datasets
ChIP H1 ENCFF239FFS 220 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 191 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 187 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 220 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 220 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 220 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 220 bp overlap
ChIP HEK293T_RING1Bfl GSE119618.RNF2.HEK293T_RING1Bfl 194 bp overlap
ChIP K-562 ENCSR138FUZ.RNF2.K-562 124 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 122 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 187 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 164 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 185 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 220 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 54 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 220 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 197 bp overlap
SMARCC1 2 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 93 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 72 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 149 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 185 bp overlap
SUZ12 12 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 220 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 220 bp overlap
ChIP H1 ENCFF881NFR 220 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 220 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 220 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 220 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 220 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 220 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 220 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 220 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 220 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 53 bp overlap
TAF15 1 dataset
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 170 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 220 bp overlap
TCF7L2 2 datasets
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 90 bp overlap
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 94 bp overlap
TET2 1 dataset
ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 199 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 87 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 63 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 113 bp overlap