chr2 : 174,344,713 174,344,984
271 bp 36 TFs 2 linked genes
This 271 bp open chromatin element is linked to ENSG00000280414 and SP9 and is bound by 36 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000280414 7.1 kb Proximal Proximity
SP9 9.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:174,339,713 – 174,349,984
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
BRD2 1 dataset
ChIP MDA-MB-231_NTsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_NTsiRNA_JQ1 149 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 151 bp overlap
CTCF 81 datasets
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 112 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 114 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 57 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 100 bp overlap
ChIP C4-2B ENCFF821XVN 198 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 142 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 105 bp overlap
ChIP Caco-2 ENCFF753NZV 59 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 235 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 59 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 52 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 105 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 141 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 58 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 89 bp overlap
ChIP GM23338 ENCFF832KWE 138 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 144 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 252 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 142 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 222 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 100 bp overlap
ChIP HFFc6 ENCFF005CJI 60 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 271 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 120 bp overlap
ChIP ID00015 GSE76922.CTCF.ID00015 98 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 65 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 53 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 75 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 115 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 216 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 145 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 205 bp overlap
ChIP Panc1 ENCFF056JQX 138 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 148 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 232 bp overlap
ChIP RWPE1 ENCFF200GQF 57 bp overlap
ChIP RWPE2 ENCFF911IEE 124 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 52 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 152 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 87 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 59 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 180 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 129 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 165 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 77 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 70 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 262 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 58 bp overlap
ChIP brain ENCFF067KUH 77 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 109 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 60 bp overlap
ChIP chondrocyte ENCFF134ORZ 202 bp overlap
ChIP chondrocyte ENCFF134ORZ 202 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 135 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 80 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 87 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 107 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF092NXX 76 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 79 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 85 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 182 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 135 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 59 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 59 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 132 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 170 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 142 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 89 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 55 bp overlap
ChIP natural killer cell ENCFF517SNI 110 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 55 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 271 bp overlap
ChIP neural cell ENCFF335ADI 66 bp overlap
ChIP neural progenitor cell ENCFF581WPG 96 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 174 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 89 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 151 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 77 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 178 bp overlap
ChIP stomach ENCFF593FMT 154 bp overlap
ChIP transverse colon ENCFF046SHF 56 bp overlap
EZH2 6 datasets
ChIP H1 ENCFF232NZA 271 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 240 bp overlap
ChIP hepatocyte ENCFF118DKH 165 bp overlap
ChIP hepatocyte ENCFF552DZB 56 bp overlap
ChIP neural progenitor cell ENCFF018MKA 271 bp overlap
ChIP neural progenitor cell ENCFF472NFV 271 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 185 bp overlap
FOXA1 1 dataset
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 63 bp overlap
FOXA2 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 107 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 115 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 211 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 271 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 221 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 271 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 151 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR000DJZ.HDAC8.K-562 222 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF354NRH 271 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 216 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 271 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 232 bp overlap
JUN 2 datasets
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 246 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 210 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 110 bp overlap
L3MBTL2 1 dataset
ChIP K562 ENCFF320EQC 62 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 154 bp overlap
MNT 1 dataset
ChIP Hep-G2 ENCSR730TBC.MNT.Hep-G2 74 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 201 bp overlap
RAD21 18 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 214 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 74 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 96 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 242 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 103 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 57 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 122 bp overlap
ChIP MDM_-dNS1 GSE103477.RAD21.MDM_-dNS1 178 bp overlap
ChIP MDM_IFNb GSE103477.RAD21.MDM_IFNb 162 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 53 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 143 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 55 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 80 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 84 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 73 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 95 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 102 bp overlap
ChIP neural cell ENCFF564MOT 55 bp overlap
RNF2 2 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 255 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 261 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 124 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 146 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 56 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 106 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 227 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 163 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 271 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 114 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 102 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 102 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 178 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 229 bp overlap
SUZ12 1 dataset
ChIP H1 ENCFF881NFR 271 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 205 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap