chr2 : 139,763,534 – 139,764,238
704 bp 69 TFs 0 linked genes
This 704 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:139,758,534 – 139,769,238
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
Atoh1 4 datasets
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
Motif DE_36h DE_36h-Atoh1_MA1467.3 7 bp overlap
Motif DE_48h DE_48h-Atoh1_MA1467.3 7 bp overlap
Motif DE_60h DE_60h-Atoh1_MA1467.3 7 bp overlap
BARX2 2 datasets
Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap
Motif DE_60h DE_60h-BARX2_MA1471.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 351 bp overlap
ESR2 4 datasets
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
Motif DE_36h DE_36h-ESR2_MA0258.2 15 bp overlap
Motif DE_48h DE_48h-ESR2_MA0258.2 15 bp overlap
Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap
ETV6 1 dataset
ChIP Reh_pCCL-ETV6-HA GSE102785.ETV6.Reh_pCCL-ETV6-HA 168 bp overlap
FIGLA 4 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 602 bp overlap
ChIP DE DE-FOXA2-2 595 bp overlap
FOXB1 1 dataset
Motif DE_36h DE_36h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap
FOXD2 7 datasets
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
FOXE1 4 datasets
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXH1 4 datasets
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
FOXN3 2 datasets
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
GATA2 3 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 458 bp overlap
ChIP DE DE-GATA4-2 525 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 573 bp overlap
ChIP DE DE-GATA6-2 528 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 454 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 538 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 386 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 462 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 561 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 493 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 548 bp overlap
Gata3 3 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Gli1 4 datasets
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Motif DE_36h DE_36h-Gli1_MA1990.2 10 bp overlap
Motif DE_48h DE_48h-Gli1_MA1990.2 10 bp overlap
Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap
HAND2 4 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
HOXC12 4 datasets
Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap
Motif DE_36h DE_36h-HOXC12_MA0906.2 10 bp overlap
Motif DE_48h DE_48h-HOXC12_MA0906.2 10 bp overlap
Motif DE_60h DE_60h-HOXC12_MA0906.2 10 bp overlap
HOXD11 4 datasets
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
Motif DE_36h DE_36h-HOXD11_MA0908.2 9 bp overlap
Motif DE_48h DE_48h-HOXD11_MA0908.2 9 bp overlap
Motif DE_60h DE_60h-HOXD11_MA0908.2 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 256 bp overlap
KLF17 4 datasets
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap
Motif DE_48h DE_48h-KLF17_MA1514.2 14 bp overlap
Motif DE_60h DE_60h-KLF17_MA1514.2 14 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MTF1 3 datasets
Motif DE_36h DE_36h-MTF1_MA0863.1 14 bp overlap
Motif DE_48h DE_48h-MTF1_MA0863.1 14 bp overlap
Motif DE_60h DE_60h-MTF1_MA0863.1 14 bp overlap
Mecom 3 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NEUROD1 4 datasets
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_36h DE_36h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_48h DE_48h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 4 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_36h DE_36h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_48h DE_48h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_60h DE_60h-NEUROG2_MA1642.2 7 bp overlap
Neurod2 4 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_36h DE_36h-Neurod2_MA0668.3 8 bp overlap
Motif DE_48h DE_48h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
OSR2 1 dataset
Motif DE_36h DE_36h-OSR2_MA1646.2 8 bp overlap
PKNOX1 4 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
POU2F3 3 datasets
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
Motif DE_48h DE_48h-POU2F3_MA0627.3 9 bp overlap
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
POU5F1 3 datasets
Motif DE_36h DE_36h-POU5F1_MA1115.2 7 bp overlap
Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
Ptf1A 4 datasets
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_36h DE_36h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
RREB1 4 datasets
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap
Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap
Motif DE_60h DE_60h-RREB1_MA0073.2 19 bp overlap
Rhox11 3 datasets
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
Runx1 4 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
SMAD2 4 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 479 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 606 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 434 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 411 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 552 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 516 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 460 bp overlap
SOX10 4 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX14 3 datasets
Motif DE_36h DE_36h-SOX14_MA1562.2 9 bp overlap
Motif DE_48h DE_48h-SOX14_MA1562.2 9 bp overlap
Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 245 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 282 bp overlap
SOX18 3 datasets
Motif DE_36h DE_36h-SOX18_MA1563.2 8 bp overlap
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX8 3 datasets
Motif DE_36h DE_36h-SOX8_MA0868.3 7 bp overlap
Motif DE_48h DE_48h-SOX8_MA0868.3 7 bp overlap
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
SOX9 3 datasets
Motif DE_36h DE_36h-SOX9_MA0077.2 8 bp overlap
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SRY 3 datasets
Motif DE_36h DE_36h-SRY_MA0084.2 7 bp overlap
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap
Sox5 3 datasets
Motif DE_36h DE_36h-Sox5_MA0087.3 8 bp overlap
Motif DE_48h DE_48h-Sox5_MA0087.3 8 bp overlap
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Stat4 1 dataset
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
Stat5b 4 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif DE_36h DE_36h-Stat5b_MA1625.2 9 bp overlap
Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 261 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 175 bp overlap
TEAD4 4 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
THRB 4 datasets
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
Motif DE_36h DE_36h-THRB_MA1575.2 17 bp overlap
Motif DE_48h DE_48h-THRB_MA1575.2 17 bp overlap
Motif DE_60h DE_60h-THRB_MA1575.2 17 bp overlap
TRPS1 3 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
TWIST1 4 datasets
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Motif DE_36h DE_36h-TWIST1_MA1123.3 8 bp overlap
Motif DE_48h DE_48h-TWIST1_MA1123.3 8 bp overlap
Motif DE_60h DE_60h-TWIST1_MA1123.3 8 bp overlap
Wt1 4 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
ZBTB12 3 datasets
Motif DE_36h DE_36h-ZBTB12_MA1649.2 7 bp overlap
Motif DE_48h DE_48h-ZBTB12_MA1649.2 7 bp overlap
Motif DE_60h DE_60h-ZBTB12_MA1649.2 7 bp overlap
ZEB1 4 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF354A 2 datasets
Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF416 4 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap
Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap
ZNF528 2 datasets
Motif DE_36h DE_36h-ZNF528_MA1597.1 17 bp overlap
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
ZNF708 4 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
Motif DE_48h DE_48h-ZNF708_MA1730.2 9 bp overlap
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
ZNF766 2 datasets
Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
ZNF85 4 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Zfp335 4 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
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