chr2 : 126,029,184 – 126,029,646
462 bp 51 TFs 0 linked genes
This 462 bp open chromatin element has no linked target genes and is bound by 51 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:126,024,184 – 126,034,646
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
CEBPA 2 datasets
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
CTCF 61 datasets
ChIP 81-3 ERP002246.CTCF.81-3 121 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 317 bp overlap
ChIP Caco-2 ENCFF934QYS 217 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 134 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 288 bp overlap
ChIP GM23338 ENCFF531QOI 371 bp overlap
ChIP GM23338 ENCFF772DML 100 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 132 bp overlap
ChIP H9 ENCFF152GTF 265 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 322 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 297 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 251 bp overlap
ChIP IMR-5 GSE78957.CTCF.IMR-5 99 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 405 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 187 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 135 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 172 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 168 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 243 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 151 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 370 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 323 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 92 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 155 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 169 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 194 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 196 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 255 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 178 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 103 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 267 bp overlap
ChIP brain ENCFF163BBN 236 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 185 bp overlap
ChIP endodermal cell ENCFF471YCZ 300 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 233 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 159 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 386 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 190 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 269 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 193 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 171 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 148 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 175 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 226 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 218 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 180 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 169 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 213 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 195 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 235 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 303 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 230 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 186 bp overlap
ChIP liver ENCFF895ERR 251 bp overlap
ChIP lung ENCSR463XCZ.CTCF.lung 305 bp overlap
ChIP neural progenitor cell ENCFF420RBO 159 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 256 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 141 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 175 bp overlap
ChIP right lobe of liver ENCFF011NDG 360 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 176 bp overlap
ESRRA 1 dataset
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 173 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 162 bp overlap
HSF1 1 dataset
Motif DE_12h DE_12h-HSF1_MA0486.2 13 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 238 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
NANOG 2 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 168 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 221 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap
Nr2F6 2 datasets
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 21 datasets
ChIP H1 ENCFF698EWO 187 bp overlap
ChIP H1 ENCFF967OJF 137 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.RAD21.HEC-1-B_R1-insertion 88 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 125 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 124 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 173 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 220 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 190 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.RAD21.THP-1_siCtrl-NS1-Pam3csk-0h 192 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 280 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 236 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 207 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 252 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 254 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 263 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 315 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 323 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 190 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 223 bp overlap
ChIP liver ENCFF485PAC 149 bp overlap
ChIP liver ENCFF522JHE 211 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 112 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 92 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 242 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 169 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 234 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 275 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 275 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 2 datasets
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox5 2 datasets
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TEAD1 2 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 1 dataset
ChIP H9 GSE39912.TP53.H9 206 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 148 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 125 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 294 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 249 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 334 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZNF768 2 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
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