chr2 : 80,306,509 80,306,827
318 bp 35 TFs 1 linked gene
This 318 bp open chromatin element is linked to LRRTM1 and is bound by 35 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LRRTM1 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:80,301,509 – 80,311,827
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 174 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 263 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 179 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 203 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 161 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 136 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 297 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 318 bp overlap
ChIP DE DE-FOXA2-2 303 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 318 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE DE-GATA6-2 257 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 251 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 277 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 266 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 212 bp overlap
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 176 bp overlap
JUN 1 dataset
ChIP ESC S34-ESC-d0-JUN-exp2 197 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 312 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 289 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 187 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-MORC2-KO GSE95451.MORC2.HeLa_V5-MORC2-KO 166 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 190 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 318 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 196 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 170 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 254 bp overlap
ChIP hESC GSE18292.NANOG.hESC 95 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 270 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 112 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 275 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 217 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 188 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 101 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 318 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 189 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 318 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 220 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 213 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 279 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 274 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 316 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 172 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 262 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 269 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 188 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 144 bp overlap
SRSF1 1 dataset
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 177 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 203 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 300 bp overlap
ZNF512 4 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 318 bp overlap
ChIP K562 ENCFF601EMZ 218 bp overlap
ChIP K562 ENCFF601EMZ 318 bp overlap
ChIP WTC11 ENCFF086TTM 171 bp overlap