chr2 : 54,411,798 54,412,223
425 bp 44 TFs 0 linked genes
This 425 bp open chromatin element has no linked target genes and is bound by 44 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:54,406,798 – 54,417,223
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
ARNT 2 datasets
ChIP 501-mel GSE95280.ARNT.501-mel 180 bp overlap
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 285 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 152 bp overlap
BCL6B 2 datasets
ChIP HEK293 ENCFF555YRB 228 bp overlap
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 225 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 187 bp overlap
BRD4 3 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 425 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 241 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 210 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 421 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 156 bp overlap
CTCF 1 dataset
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 138 bp overlap
EPAS1 1 dataset
ChIP 501-mel GSE95280.EPAS1.501-mel 217 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 244 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 211 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 141 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 189 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 311 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 271 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 262 bp overlap
GATA2 1 dataset
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 168 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 287 bp overlap
ChIP DE DE-GATA4-2 419 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 277 bp overlap
ChIP foregut GSE117136.GATA4.foregut 304 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 379 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 425 bp overlap
GATA6 15 datasets
ChIP AGS GSE51705.GATA6.AGS 147 bp overlap
ChIP DE DE-GATA6-1 279 bp overlap
ChIP DE DE-GATA6-2 425 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 328 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 355 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 340 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 425 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 327 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 209 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 345 bp overlap
ChIP foregut GSE117136.GATA6.foregut 358 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 319 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 338 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 425 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 357 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 425 bp overlap
ChIP K562 ENCFF055GAZ 247 bp overlap
ChIP K562 ENCFF317JJX 241 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 98 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 103 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 291 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 208 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCFF482NJV 423 bp overlap
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 344 bp overlap
MAX 1 dataset
ChIP K562 ENCFF524IJO 374 bp overlap
MITF 2 datasets
ChIP 501-mel GSE61965.MITF.501-mel 305 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 265 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 261 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 156 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 253 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 200 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 152 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 357 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 327 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 272 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 212 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 264 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 421 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 421 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 121 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 83 bp overlap
TRIM28 4 datasets
ChIP HEK293 ENCFF265CEM 425 bp overlap
ChIP HEK293 ENCFF582MWI 425 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 358 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 358 bp overlap
USF1 1 dataset
ChIP K-562 ENCSR000BKT.USF1.K-562 154 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 285 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 317 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 172 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 176 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 191 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 182 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 256 bp overlap