chr1 : 29,984,290 29,984,744
454 bp 47 TFs 0 linked genes
This 454 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:29,979,290 – 29,989,744
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 188 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 137 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 284 bp overlap
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 109 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 198 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 357 bp overlap
BRD4 4 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 217 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 454 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 449 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 454 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 243 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 178 bp overlap
ChIP BLaER1 ENCFF262VBH 314 bp overlap
ChIP BLaER1 ENCFF364PUR 231 bp overlap
ChIP BLaER1 ENCFF460KDD 86 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 230 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 57 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 293 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 255 bp overlap
EP300 1 dataset
ChIP pulmonary-artery_endothelial-cell_siCtrl GSE89786.EP300.pulmonary-artery_endothelial-cell_siCtrl 306 bp overlap
ESR1 6 datasets
ChIP MCF-7_RAD1901 GSE115607.ESR1.MCF-7_RAD1901 96 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 166 bp overlap
ChIP breast_tumor_Male_16 GSE104399.ESR1.breast_tumor_Male_16 189 bp overlap
ChIP breast_tumor_Male_7 GSE104399.ESR1.breast_tumor_Male_7 454 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 201 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 255 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 178 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 263 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 304 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 360 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 347 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 407 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 256 bp overlap
ChIP DE DE-FOXA2-1 430 bp overlap
ChIP DE DE-FOXA2-2 425 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 97 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 108 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_16 GSE104399.GATA3.breast_tumor_Male_16 79 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 436 bp overlap
ChIP DE DE-GATA4-2 365 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 340 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 338 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 358 bp overlap
ChIP DE DE-GATA6-2 454 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 286 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 71 bp overlap
HDAC2 1 dataset
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 158 bp overlap
JUN 2 datasets
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 197 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 141 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 376 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 454 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 204 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 321 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 314 bp overlap
MED1 1 dataset
ChIP LNCaP_Veh GSE125245.MED1.LNCaP_Veh 141 bp overlap
POLR2A 3 datasets
ChIP spleen ENCFF044PYR 148 bp overlap
ChIP spleen ENCFF446ZGT 188 bp overlap
ChIP spleen ENCFF731LLC 250 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 67 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 311 bp overlap
PPARG 2 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 54 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 161 bp overlap
RELA 9 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 187 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 241 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 173 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 260 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 292 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 160 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 136 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 249 bp overlap
REST 2 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 262 bp overlap
ChIP neural ENCSR000BTV.REST.neural 186 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 143 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 454 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 176 bp overlap
SMARCC1 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 303 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 122 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 160 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 345 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 376 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 273 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 85 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 107 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 194 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 338 bp overlap
TP63 1 dataset
ChIP BxPC-3 GSE115461.TP63.BxPC-3 199 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 230 bp overlap