chr21 : 42,925,494 42,925,953
459 bp 42 TFs 7 linked genes
This 459 bp open chromatin element is linked to 7 target genes and is bound by 42 transcription factors.
Linked Genes
7 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ERVH48-1 at TSS At TSS Proximity
NDUFV3 32.5 kb Distal Multiome
WDR4 46.2 kb Distal Multiome
PKNOX1 48.8 kb Distal Multiome
CBS 150.2 kb Distal Multiome
U2AF1 181.8 kb Distal Multiome
PDE9A 272.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr21:42,920,494 – 42,930,953
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate-cancer_PDX_141 GSE130408.AR.prostate-cancer_PDX_141 144 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 77 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 317 bp overlap
BRD4 5 datasets
ChIP DND41_E GSE54379.BRD4.DND41_E 317 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 258 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 217 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 210 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 261 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 198 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 258 bp overlap
ChIP BLaER1 ENCFF093OYK 380 bp overlap
ChIP BLaER1 ENCFF274GAT 367 bp overlap
ChIP BLaER1 ENCFF364PUR 443 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 198 bp overlap
FOXA1 3 datasets
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 163 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 157 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 459 bp overlap
ChIP DE DE-FOXA2-2 459 bp overlap
FOXP2 2 datasets
ChIP PFSK-1 ENCFF349WGE 301 bp overlap
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 312 bp overlap
GABPA 1 dataset
ChIP K-562 ENCSR000BLO.GABPA.K-562 216 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-1 309 bp overlap
HOXB13 7 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 265 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 97 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 96 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 72 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 352 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 276 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 363 bp overlap
IKZF1 2 datasets
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 238 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 459 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 358 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 242 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 328 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 459 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 259 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 420 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 129 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 459 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 459 bp overlap
ChIP H1 ENCFF566JSR 459 bp overlap
ChIP PFSK-1 ENCFF576NIT 459 bp overlap
POLR2G 3 datasets
ChIP K562 ENCFF047BLG 51 bp overlap
ChIP K562 ENCFF047BLG 290 bp overlap
ChIP K562 ENCFF648YPL 290 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 273 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 459 bp overlap
PRDM10 3 datasets
ChIP HEK293 ENCFF145WQQ 427 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 265 bp overlap
ChIP K562 ENCFF740YLK 197 bp overlap
RBFOX2 5 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 459 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 202 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 181 bp overlap
ChIP K562 ENCFF196WTG 190 bp overlap
ChIP K562 ENCFF967GRF 192 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 259 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 307 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 436 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 317 bp overlap
STAT3 1 dataset
ChIP SU-DHL-10 GSE50723.STAT3.SU-DHL-10 108 bp overlap
SUPT5H 2 datasets
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 338 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 443 bp overlap
TAF1 1 dataset
ChIP PFSK-1 ENCFF982LZL 415 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 290 bp overlap
TBP 5 datasets
ChIP hESC GSE122298.TBP.hESC 286 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 249 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 153 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 195 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 338 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 459 bp overlap
ZBTB33 2 datasets
ChIP K562 ENCFF427SDV 459 bp overlap
ChIP K562 ENCFF875HLX 259 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 459 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 188 bp overlap