chr2 : 16,962,542 – 16,962,940
398 bp 44 TFs 1 linked gene
This 398 bp open chromatin element is linked to LINC01866 and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01866 7.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:16,957,542 – 16,967,940
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 398 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 379 bp overlap
BRD4 4 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 398 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 274 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 398 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 73 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 282 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 247 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 398 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 167 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 153 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 285 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 265 bp overlap
FOXA1 2 datasets
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 95 bp overlap
ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 55 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 398 bp overlap
ChIP DE DE-FOXA2-2 346 bp overlap
GATA2 7 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 51 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 51 bp overlap
ChIP SH-SY5Y ENCFF485YIB 317 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 323 bp overlap
ChIP SK-N-SH ENCFF764OZD 375 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 196 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 192 bp overlap
GATA3 6 datasets
ChIP BE2C GSE65664.GATA3.BE2C 193 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 304 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 251 bp overlap
ChIP SH-SY5Y ENCFF475HYF 202 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 356 bp overlap
ChIP SK-N-SH ENCFF040SSB 364 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 398 bp overlap
ChIP DE DE-GATA4-2 398 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 392 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 359 bp overlap
ChIP DE DE-GATA6-2 398 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 363 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 398 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 345 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 398 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 382 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 383 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 310 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 325 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 331 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 348 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 259 bp overlap
IRF1 1 dataset
ChIP monocyte_notreatment GSE100381.IRF1.monocyte_notreatment 80 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 203 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 54 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 195 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 199 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 225 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 180 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 272 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 231 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 320 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 266 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 272 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 246 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 285 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 237 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 100 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 133 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 398 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 298 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 359 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 275 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 353 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 272 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 398 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 398 bp overlap
SMARCA4 7 datasets
ChIP NGP GSE134626.SMARCA4.NGP 378 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 347 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 267 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 398 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 398 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 398 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 153 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 206 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 357 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 398 bp overlap
SOX2 8 datasets
ChIP HNSC GSE69479.SOX2.HNSC 329 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 224 bp overlap
ChIP NPC GSE122631.SOX2.NPC 348 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 398 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 147 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 280 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 356 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 260 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 354 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 325 bp overlap
SS18 1 dataset
ChIP NGP_ARID1A-mut1 GSE134626.SS18.NGP_ARID1A-mut1 225 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 281 bp overlap
TCF4 2 datasets
ChIP SK-N-SH ENCFF270OWF 223 bp overlap
ChIP SK-N-SH ENCFF270OWF 280 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 176 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 176 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 73 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 280 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 398 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 179 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 179 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 238 bp overlap
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