chr19 : 56,083,468 – 56,083,901
433 bp 46 TFs 0 linked genes
This 433 bp open chromatin element has no linked target genes and is bound by 46 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:56,078,468 – 56,088,901
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 178 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000BLI.E2F6.K-562 97 bp overlap
EHMT2 2 datasets
ChIP K-562 ENCSR175EOM.EHMT2.K-562 433 bp overlap
ChIP K562 ENCFF053BWO 53 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 62 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 217 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 306 bp overlap
ChIP DE DE-GATA4-2 365 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 294 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 345 bp overlap
ChIP DE DE-GATA6-2 346 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 307 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 281 bp overlap
ChIP foregut GSE117136.GATA6.foregut 235 bp overlap
GRHL2 3 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 99 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 79 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 100 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 353 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000BMG.HDAC2.K-562 119 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 294 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 292 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 167 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 79 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 198 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 235 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 123 bp overlap
MIER1 1 dataset
ChIP K-562 ENCSR426MDV.MIER1.K-562 433 bp overlap
MYC 1 dataset
ChIP Jurkat GSE83777.MYC.Jurkat 186 bp overlap
NCOA1 1 dataset
ChIP K562 ENCFF154JQE 109 bp overlap
NR3C1 1 dataset
ChIP Ishikawa GSE109891.NR3C1.Ishikawa 131 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 151 bp overlap
PAX5 1 dataset
ChIP GM12891 ENCSR000BJH.PAX5.GM12891 124 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 95 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 195 bp overlap
ChIP K-562 ENCSR052PTN.PCBP1.K-562 145 bp overlap
POLR2A 1 dataset
ChIP HepG2 ENCFF718XAJ 92 bp overlap
RAD21 1 dataset
ChIP K-562 ENCSR000BKV.RAD21.K-562 168 bp overlap
RBM22 1 dataset
ChIP HepG2 ENCFF561IAJ 53 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 234 bp overlap
REST 68 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 433 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 428 bp overlap
ChIP A549 ENCFF148AIS 148 bp overlap
ChIP CD4 GSE49570.REST.CD4 433 bp overlap
ChIP GM12878 ENCFF235NGC 84 bp overlap
ChIP GM12878 ENCFF943QPB 93 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 363 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 318 bp overlap
ChIP GM23338 ENCFF024TCL 177 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 247 bp overlap
ChIP GP5D GSE51234.REST.GP5D 104 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 99 bp overlap
ChIP H1 ENCFF203SWY 102 bp overlap
ChIP H1 ENCFF203SWY 55 bp overlap
ChIP H1 ENCFF429RUE 161 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 337 bp overlap
ChIP HCT116 ENCFF929AYY 161 bp overlap
ChIP HEK293 ENCFF073DOT 128 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 129 bp overlap
ChIP HL-60 ENCFF589LOF 218 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 381 bp overlap
ChIP HeLa-S3 ENCFF911DTC 145 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 414 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 419 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 171 bp overlap
ChIP HepG2 ENCFF122AWR 93 bp overlap
ChIP Ishikawa ENCFF456OHV 217 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 420 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 433 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 433 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 433 bp overlap
ChIP K-562 GSE70482.REST.K-562 324 bp overlap
ChIP K562 ENCFF430APM 193 bp overlap
ChIP K562 ENCFF685YZN 179 bp overlap
ChIP K562 ENCFF688UKW 135 bp overlap
ChIP K562 ENCFF758CZL 166 bp overlap
ChIP MCF-7 ENCFF893RRD 189 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 433 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 143 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 114 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 433 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 433 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 430 bp overlap
ChIP PFSK-1 ENCFF668WMP 72 bp overlap
ChIP PFSK-1 ENCFF845VHA 106 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 433 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 421 bp overlap
ChIP Panc1 ENCFF338WSQ 96 bp overlap
ChIP Panc1 ENCFF518EEQ 214 bp overlap
ChIP Panc1 ENCFF629OJO 125 bp overlap
ChIP SK-N-SH ENCFF635KBN 146 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 107 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 433 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 337 bp overlap
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 261 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 433 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 433 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 433 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 433 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 227 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 202 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 189 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 235 bp overlap
ChIP liver ENCFF240FWT 203 bp overlap
ChIP liver ENCFF577AZT 176 bp overlap
ChIP liver ENCSR893QWP.REST.liver 433 bp overlap
ChIP liver ENCSR867WPH.REST.liver 433 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 97 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 58 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 238 bp overlap
SMARCA4 1 dataset
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 162 bp overlap
SMARCB1 1 dataset
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 264 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 285 bp overlap
STAT5A 1 dataset
ChIP GM12878 ENCSR000BQZ.STAT5A.GM12878 168 bp overlap
SUPT6H 2 datasets
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 271 bp overlap
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 101 bp overlap
TEAD4 2 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 145 bp overlap
ChIP A549 ENCFF243FTL 206 bp overlap
TP53 1 dataset
ChIP BC-3_NUT ERP014035.TP53.BC-3_NUT 87 bp overlap
TRIM24 2 datasets
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 290 bp overlap
ChIP LNCaP_DHT GSE69331.TRIM24.LNCaP_DHT 354 bp overlap
VEZF1 2 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 310 bp overlap
ChIP K562 ENCFF053XDV 283 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 126 bp overlap
ZMYM3 1 dataset
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 214 bp overlap
ZNF148 3 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 294 bp overlap
ChIP K-562 GSE121133.ZNF148.K-562 277 bp overlap
ChIP K562 ENCFF352SDL 426 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 295 bp overlap
ZNF629 1 dataset
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 205 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 188 bp overlap
ZNF740 3 datasets
ChIP K-562 ENCSR737UST.ZNF740.K-562 332 bp overlap
ChIP K562 ENCFF505NFV 244 bp overlap
ChIP K562 ENCFF913GVQ 234 bp overlap
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