chr19 : 47,398,374 47,399,091
717 bp 40 TFs 0 linked genes
This 717 bp open chromatin element has no linked target genes and is bound by 40 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:47,393,374 – 47,404,091
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 135 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 317 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 201 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 215 bp overlap
BRD4 2 datasets
ChIP MCF-10A ERP003925.BRD4.MCF-10A 265 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 177 bp overlap
CTCF 3 datasets
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 200 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 197 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 81 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 161 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 241 bp overlap
ESR1 5 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 221 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 272 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 315 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 295 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 326 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 165 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 227 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 111 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 441 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 313 bp overlap
GATA2 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 169 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 340 bp overlap
ChIP DE DE-GATA4-2 395 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-2 465 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 535 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 56 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 402 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 575 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 82 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 399 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 507 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 233 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 359 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 187 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 365 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 152 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 323 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 318 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 372 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 313 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 144 bp overlap
MED1 2 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 160 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 296 bp overlap
MYB 1 dataset
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 103 bp overlap
NANOG 1 dataset
ChIP GM23338 ENCFF065NZG 229 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 239 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 207 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 332 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 717 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 342 bp overlap
REST 1 dataset
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 148 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 238 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 191 bp overlap
RUNX1T1 2 datasets
ChIP CD34 GSE80773.RUNX1T1.CD34 164 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 148 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 444 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 454 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 678 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 308 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 717 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 175 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 289 bp overlap