chr18 : 53,753,471 53,754,073
602 bp 41 TFs 0 linked genes
This 602 bp open chromatin element has no linked target genes and is bound by 41 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:53,748,471 – 53,759,073
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 488 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 322 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 317 bp overlap
BRD4 3 datasets
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 269 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 302 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 371 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 153 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 316 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 351 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 435 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 302 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 305 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 402 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 327 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 239 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 427 bp overlap
ChIP DE DE-FOXA2-2 504 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 199 bp overlap
GATA3 1 dataset
ChIP Kelly GSE94822.GATA3.Kelly 417 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 335 bp overlap
ChIP DE DE-GATA4-2 441 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 326 bp overlap
ChIP DE DE-GATA6-2 440 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 566 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 499 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 476 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 323 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 558 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 576 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 475 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 220 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 443 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 509 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 401 bp overlap
MYCN 3 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 298 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 432 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 260 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 261 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 325 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 172 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 282 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 602 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 446 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 602 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 218 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 285 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 353 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 356 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 160 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 418 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 388 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 278 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 300 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 298 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 257 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 303 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 216 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 269 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 602 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 301 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 435 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 238 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 316 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 190 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 410 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 410 bp overlap