Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

45 transcription factors

ATF4 1 dataset

Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap

Arid5a 1 dataset

Motif DE_12h DE_12h-Arid5a_MA0602.2 8 bp overlap

BCL11A 2 datasets

ChIP WA01 ENCSR000BMJ.BCL11A.WA01 135 bp overlap

ChIP WA01 ENCSR000BIP.BCL11A.WA01 107 bp overlap

CEBPA 1 dataset

Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap

CEBPG 1 dataset

Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap

CHD7 1 dataset

ChIP WA01 ENCSR000AVA.CHD7.WA01 158 bp overlap

CREB1 2 datasets

ChIP GM23338 ENCFF432ZEW 284 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 241 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 195 bp overlap

EP300 2 datasets

ChIP hESC GSE17917.EP300.hESC 264 bp overlap

ChIP neural ENCSR843ZUP.EP300.neural 383 bp overlap

ERF::HOXB13 1 dataset

Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap

ETV2::DRGX 1 dataset

Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap

GATA6 4 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 237 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 336 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 240 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 292 bp overlap

HDAC2 2 datasets

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 236 bp overlap

HOXD12::ELK1 1 dataset

Motif DE_12h DE_12h-HOXD12ELK1_MA1958.2 13 bp overlap

Isl1 1 dataset

Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap

JUN 5 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 296 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 401 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 301 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 320 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 402 bp overlap

KLF9 2 datasets

Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap

Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap

LEF1 1 dataset

ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 245 bp overlap

LIN54 1 dataset

Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 288 bp overlap

NANOG 11 datasets

ChIP GM23338 ENCFF065NZG 91 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 342 bp overlap

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 422 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 422 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 226 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 422 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 422 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 422 bp overlap

ChIP hESC GSE20650.NANOG.hESC 165 bp overlap

ChIP hESC GSE18292.NANOG.hESC 274 bp overlap

NIPBL 3 datasets

ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 351 bp overlap

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 302 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 200 bp overlap

POU5F1 9 datasets

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 422 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 383 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 268 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 333 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 248 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 422 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 226 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 347 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RREB1 1 dataset

Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap

SMAD3 1 dataset

ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap

SMARCA4 3 datasets

ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 416 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 419 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 390 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 422 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 422 bp overlap

SMARCC1 3 datasets

ChIP ESC S25-ESC-d0-BAF155-exp1 410 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 422 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 422 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 104 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 345 bp overlap

SP1 2 datasets

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 200 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 301 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 398 bp overlap

TEAD4 1 dataset

ChIP ESC S26-ESC-d0-TEAD4-exp1 271 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 412 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZNF143 1 dataset

Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 262 bp overlap

ZNF211 1 dataset

Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 153 bp overlap

ZNF547 1 dataset

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap

ZSCAN4 2 datasets

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap

Genome Browser