Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

56 transcription factors

CREB1 2 datasets

ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 235 bp overlap

ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 343 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 563 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 702 bp overlap

ChIP DE DE-FOXA2-2 659 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 914 bp overlap

ChIP DE DE-GATA4-2 775 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 600 bp overlap

ChIP DE DE-GATA6-2 697 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 490 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 641 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 659 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 593 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 642 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 853 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 497 bp overlap

HOXB13 3 datasets

ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 192 bp overlap

ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 275 bp overlap

ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 191 bp overlap

Hand1::Tcf3 1 dataset

Motif DE_60h DE_60h-Hand1Tcf3_MA0092.2 9 bp overlap

IRF2 1 dataset

Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap

IRF3 1 dataset

Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap

Irf1 1 dataset

Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap

JUN 6 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 474 bp overlap

ChIP DE_D1 S13-DE-d1-JUN-exp1 359 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 612 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 572 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 350 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 691 bp overlap

MEIS1 1 dataset

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

MGA 1 dataset

Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap

MLLT1 1 dataset

ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 172 bp overlap

Msgn1 1 dataset

Motif DE_60h DE_60h-Msgn1_MA1524.3 10 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 440 bp overlap

NEUROG2 1 dataset

Motif DE_60h DE_60h-NEUROG2_MA0669.1 10 bp overlap

NR1H4::RXRA 1 dataset

Motif DE_60h DE_60h-NR1H4RXRA_MA1146.2 13 bp overlap

NRF1 11 datasets

ChIP HepG2 ENCFF694NVY 278 bp overlap

ChIP K-562 ENCSR998AJK.NRF1.K-562 414 bp overlap

ChIP K-562 ENCSR494TDU.NRF1.K-562 369 bp overlap

ChIP K-562 ENCSR837EYC.NRF1.K-562 242 bp overlap

ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 162 bp overlap

ChIP K-562_Ab_R157-1-3H1 GSE97661.NRF1.K-562_Ab_R157-1-3H1 107 bp overlap

ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 222 bp overlap

ChIP K562 ENCFF130SGK 231 bp overlap

ChIP K562 ENCFF689EWI 372 bp overlap

ChIP K562 ENCFF791UHF 371 bp overlap

ChIP T-47D_HAEGIN2 GSE59935.NRF1.T-47D_HAEGIN2 243 bp overlap

PAX7 1 dataset

ChIP H9_DOX GSE98976.PAX7.H9_DOX 190 bp overlap

PKNOX2 1 dataset

Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 282 bp overlap

PRDM1 1 dataset

Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap

SMAD2 3 datasets

Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap

ChIP endoderm GSE29422.SMAD2.endoderm 271 bp overlap

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 299 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 967 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 1049 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 1049 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 902 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 1049 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 1049 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 867 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1049 bp overlap

SMAD3 2 datasets

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 195 bp overlap

ChIP endoderm GSE29422.SMAD3.endoderm 249 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 277 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 164 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 269 bp overlap

SOX13 1 dataset

Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 228 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 299 bp overlap

SOX2 1 dataset

Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap

SOX21 1 dataset

Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap

SOX4 1 dataset

Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap

SOX8 1 dataset

Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap

SOX9 1 dataset

Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap

SRY 1 dataset

Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap

Sox17 1 dataset

Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap

Sox3 1 dataset

Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap

Sox5 1 dataset

Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap

Sox6 1 dataset

Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap

Sox7 1 dataset

Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 311 bp overlap

TARDBP 1 dataset

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 146 bp overlap

TEAD1 1 dataset

Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap

TEAD2 1 dataset

Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap

TEAD3 1 dataset

Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap

TEAD4 1 dataset

Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap

TGIF1 1 dataset

Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap

TGIF2 1 dataset

Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap

TGIF2LX 1 dataset

Motif DE_60h DE_60h-TGIF2LX_MA1571.1 12 bp overlap

TGIF2LY 1 dataset

Motif DE_60h DE_60h-TGIF2LY_MA1572.1 12 bp overlap

Tbx6 1 dataset

Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap

Zic2 1 dataset

Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap

Gene	Expression	Dist. to TSS	Distance	Link type
LINC01630		264.9 kb	Distal	Multiome
MEX3C		460.1 kb	Distal	Multiome+HiCAR

Genome Browser