chr17 : 73,535,674 73,537,028
1,354 bp 50 TFs 3 linked genes
This 1.4 kb open chromatin element is linked to SDK2, CDC42EP4, and RPL38 and is bound by 50 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
SDK2 107.6 kb Distal Multiome
CDC42EP4 224.9 kb Distal Multiome
RPL38 666.8 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:73,530,674 – 73,542,028
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
BCL3 1 dataset
ChIP GM12878 ENCFF854PAY 57 bp overlap
BRD4 6 datasets
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 234 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 179 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 937 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 472 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 584 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 633 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 58 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 268 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 240 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 328 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 319 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 251 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 375 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 386 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 223 bp overlap
ChIP BLaER1 ENCFF335XTP 251 bp overlap
ChIP BLaER1 ENCFF364PUR 358 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 417 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 247 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 501 bp overlap
ChIP hESC GSE26097.EOMES.hESC 159 bp overlap
ESR1 4 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 224 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 141 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 333 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 305 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 253 bp overlap
ChIP cardiomyocyte_D5 GSE129986.ETS1.cardiomyocyte_D5 357 bp overlap
EZH2 6 datasets
ChIP PC-9 ENCSR793USK.EZH2.PC-9 102 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 531 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 253 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 158 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 608 bp overlap
ChIP neural progenitor cell ENCFF018MKA 573 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 261 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 303 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 281 bp overlap
ChIP DE DE-GATA4-2 523 bp overlap
ChIP foregut GSE117136.GATA4.foregut 417 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 370 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 425 bp overlap
ChIP DE DE-GATA6-2 649 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 687 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 499 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 595 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 553 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1354 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1354 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 412 bp overlap
ChIP foregut GSE117136.GATA6.foregut 366 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 353 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 391 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 274 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 360 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 363 bp overlap
GLIS2 3 datasets
ChIP HEK293 ENCFF446EIF 511 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 353 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 372 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 1264 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 429 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 316 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 650 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 582 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 421 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 435 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 112 bp overlap
KLF9 3 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 90 bp overlap
ChIP HEK293 ENCFF588INF 451 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 305 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 264 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 362 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 238 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 229 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 205 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 450 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 196 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 174 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 231 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 221 bp overlap
NRF1 3 datasets
ChIP K-562 ENCSR998AJK.NRF1.K-562 116 bp overlap
ChIP K562 ENCFF130SGK 120 bp overlap
ChIP K562 ENCFF689EWI 174 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 512 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 181 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 123 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 274 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 467 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 1004 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 613 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 314 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 64 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 266 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 630 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 551 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 569 bp overlap
SMAD2_3 8 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 539 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 840 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 334 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 381 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 394 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1243 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 355 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 547 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 182 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 139 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 256 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1127 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 201 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 61 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 294 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCFF658WIO 69 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 255 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 397 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 330 bp overlap
ZNF112 2 datasets
ChIP HEK293 ENCFF260VCH 90 bp overlap
ChIP HEK293 ENCSR751PNN.ZNF112.HEK293 85 bp overlap