chr17 : 875,256 875,758
502 bp 42 TFs 7 linked genes
This 502 bp open chromatin element is linked to 7 target genes and is bound by 42 transcription factors.
Linked Genes
7 genes
Link type
Gene Expression Dist. to TSS Distance Link type
MRM3 93.1 kb Distal Multiome
GLOD4 93.2 kb Distal Multiome
NXN 104.3 kb Distal Multiome+HiCAR
TIMM22 121.6 kb Distal Multiome
GEMIN4 123.3 kb Distal Multiome
TLCD3A 142.9 kb Distal Multiome
VPS53 160.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:870,256 – 880,758
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Dmbx1 1 dataset
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 265 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 502 bp overlap
ChIP DE DE-FOXA2-2 502 bp overlap
Foxj2 1 dataset
Motif DE_72h DE_72h-Foxj2_MA0614.1 8 bp overlap
GATA1 6 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 60 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 181 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 131 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 194 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 194 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 291 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 234 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 250 bp overlap
ChIP DE DE-GATA4-1 502 bp overlap
ChIP DE DE-GATA4-2 502 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 231 bp overlap
ChIP foregut GSE117136.GATA4.foregut 502 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 430 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 414 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 194 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 102 bp overlap
ChIP DE DE-GATA6-1 502 bp overlap
ChIP DE DE-GATA6-2 502 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 369 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 463 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 430 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 467 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 473 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 445 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 431 bp overlap
ChIP foregut GSE117136.GATA6.foregut 413 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 389 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 372 bp overlap
GFI1B 2 datasets
ChIP CD34 GSE52924.GFI1B.CD34 211 bp overlap
ChIP K-562 ENCSR509GDT.GFI1B.K-562 139 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 348 bp overlap
HSF1 1 dataset
Motif DE_72h DE_72h-HSF1_MA0486.2 13 bp overlap
HSF2 1 dataset
Motif DE_72h DE_72h-HSF2_MA0770.1 13 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 266 bp overlap
KDM1A 8 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 304 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 278 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 195 bp overlap
ChIP K562 ENCFF128TYE 411 bp overlap
ChIP K562 ENCFF133OLU 435 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 284 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 324 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 361 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 149 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 153 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 203 bp overlap
Pgr 1 dataset
Motif DE_72h DE_72h-Pgr_MA2323.1 17 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 502 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 335 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 348 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 502 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 502 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 186 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 264 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 450 bp overlap
SPIC 1 dataset
Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap
Spi1 1 dataset
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 210 bp overlap
TAL1 3 datasets
ChIP CD34 GSE52924.TAL1.CD34 93 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 157 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 178 bp overlap
ZIM3 1 dataset
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF317 1 dataset
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 146 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 265 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 230 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 159 bp overlap