chr1 : 233,228,052 233,228,602
550 bp 34 TFs 4 linked genes
This 550 bp open chromatin element is linked to 4 target genes and is bound by 34 transcription factors.
Linked Genes
4 genes
Link type
Gene Expression Dist. to TSS Distance Link type
PCNX2 67.4 kb Distal Multiome
MAP3K21 99.4 kb Distal Multiome
NTPCR 277.7 kb Distal Multiome
SIPA1L2 598.1 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:233,223,052 – 233,233,602
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 367 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 264 bp overlap
CTCF 29 datasets
ChIP A-549 ENCSR000AUE.CTCF.A-549 267 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 367 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 152 bp overlap
ChIP A-549 ENCSR000DYD.CTCF.A-549 126 bp overlap
ChIP A-549 ENCSR000BHW.CTCF.A-549 156 bp overlap
ChIP A-549 ENCSR000BHV.CTCF.A-549 111 bp overlap
ChIP A549 ENCFF434LUY 164 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 164 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 198 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 123 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 177 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 88 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 217 bp overlap
ChIP MCF-7 ENCFF162GNE 167 bp overlap
ChIP MCF-7 ENCFF198DQX 222 bp overlap
ChIP MCF-7 ENCFF494VXA 222 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 115 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 180 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 161 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 173 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 170 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 139 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 171 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 215 bp overlap
ChIP endodermal cell ENCFF471YCZ 273 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 244 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 138 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 221 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 386 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 140 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 55 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 550 bp overlap
ChIP DE DE-FOXA2-2 550 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 550 bp overlap
ChIP DE DE-GATA4-2 550 bp overlap
ChIP foregut GSE117136.GATA4.foregut 470 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 430 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 550 bp overlap
ChIP DE DE-GATA6-2 550 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 389 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 547 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 425 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 459 bp overlap
ChIP foregut GSE117136.GATA6.foregut 478 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 272 bp overlap
KLF16 1 dataset
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
NOTCH1 1 dataset
ChIP CUTLL1 GSE29600.NOTCH1.CUTLL1 95 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 199 bp overlap
PLAG1 1 dataset
Motif DE_72h DE_72h-PLAG1_MA0163.1 14 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
RAD21 4 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 172 bp overlap
ChIP A549 ENCFF047SFC 176 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 207 bp overlap
ChIP HCT116 ENCFF568PEO 246 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 550 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 514 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 197 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 137 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 535 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 528 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 174 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 174 bp overlap
TFAP2A 1 dataset
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
VEZF1 1 dataset
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
ZNF148 1 dataset
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZSCAN16 1 dataset
Motif DE_72h DE_72h-ZSCAN16_MA2100.1 18 bp overlap