chr15 : 24,683,019 24,684,655
1,636 bp 25 TFs 1 linked gene
This 1.6 kb open chromatin element is linked to NPAP1 and is bound by 25 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NPAP1 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:24,678,019 – 24,689,655
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
25 transcription factors
Source
Cell type
AR 10 datasets
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 276 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 182 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 249 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 173 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 252 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 226 bp overlap
ChIP MDA-MB-453_MPA GSE74069.AR.MDA-MB-453_MPA 258 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 277 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 237 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 264 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 141 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 378 bp overlap
BRD4 1 dataset
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 474 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 312 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 251 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
EP300 1 dataset
ChIP T-47D ENCSR000BLM.EP300.T-47D 143 bp overlap
ESR1 3 datasets
ChIP T-47D ENCSR000BKN.ESR1.T-47D 187 bp overlap
ChIP T-47D ENCSR000BJS.ESR1.T-47D 173 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 384 bp overlap
ESRRA 4 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 551 bp overlap
ChIP BT-474_AICAR GSE75876.ESRRA.BT-474_AICAR 291 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 527 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 711 bp overlap
FOXA1 11 datasets
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 323 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 208 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 175 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 298 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 227 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 428 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 208 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 375 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 322 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 179 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 318 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 327 bp overlap
ChIP DE DE-FOXA2-2 345 bp overlap
ChIP HepG2 ENCFF570ABM 405 bp overlap
GATA2 4 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 193 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 193 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 230 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 161 bp overlap
GATA3 2 datasets
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 119 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 267 bp overlap
HOXB13 7 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 199 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 64 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 122 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 75 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 230 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 157 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 256 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 267 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 244 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 213 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 236 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 193 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 295 bp overlap
NR3C1 3 datasets
ChIP BT-474 GSE152203.NR3C1.BT-474 314 bp overlap
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 328 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 268 bp overlap
PGR 3 datasets
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 273 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 169 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 353 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 111 bp overlap
SRF 2 datasets
ChIP H1 ENCFF036PEF 199 bp overlap
ChIP Ishikawa ENCFF992QXM 260 bp overlap
STAT3 11 datasets
ChIP BT-474 GSE152203.STAT3.BT-474 791 bp overlap
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 191 bp overlap
ChIP T-47D_JC4735 GSE126004.STAT3.T-47D_JC4735 297 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 333 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 343 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 275 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 524 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 664 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 397 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 183 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 656 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 324 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 273 bp overlap
TP53 1 dataset
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 328 bp overlap